Few-shot classification of Cryo-ET subvolumes with deep Brownian distance covariance.

Brief Bioinform

School of Software, Shandong University, 1500 Shunhua Road, 250101 Jinan, China.

Published: November 2024

AI Article Synopsis

  • Few-shot learning is important for classifying macromolecules in cryo-electron tomography (Cryo-ET) by allowing quick adaptation using minimal labeled data.
  • Existing methods focus on marginal distributions and fail to adequately capture feature dependencies, leading to limitations in classification accuracy.
  • The proposed method uses deep Brownian Distance Covariance (BDC) to model joint distributions, improving classification performance through enhanced feature extraction and self-distillation techniques during training and adaptation phases.

Article Abstract

Few-shot learning is a crucial approach for macromolecule classification of the cryo-electron tomography (Cryo-ET) subvolumes, enabling rapid adaptation to novel tasks with a small support set of labeled data. However, existing few-shot classification methods for macromolecules in Cryo-ET consider only marginal distributions and overlook joint distributions, failing to capture feature dependencies fully. To address this issue, we propose a method for macromolecular few-shot classification using deep Brownian Distance Covariance (BDC). Our method models the joint distribution within a transfer learning framework, enhancing the modeling capabilities. We insert the BDC module after the feature extractor and only train the feature extractor during the training phase. Then, we enhance the model's generalization capability with self-distillation techniques. In the adaptation phase, we fine-tune the classifier with minimal labeled data. We conduct experiments on publicly available SHREC datasets and a small-scale synthetic dataset to evaluate our method. Results show that our method improves the classification capabilities by introducing the joint distribution.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11637689PMC
http://dx.doi.org/10.1093/bib/bbae643DOI Listing

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