Much is known about how allosteric effectors influence the equilibrium between the relaxed (R) and tense (T) states of hemoglobin (Hb), but little is known about how and to what extent the effectors lower the intrinsic O affinity of each allosteric state, especially the R-state. Here, we provide a thorough characterization of the O equilibria of effector-bound and unbound R-quaternary form crystals of horse Hb without a quaternary structural switching. In the absence of effectors, R crystals of horse Hb were shown to bind O noncooperatively with a very high affinity virtually identical to that of R crystals of human Hb. We found that the effector bezafibrate (BZF) and its derivative L35 lower the overall O affinity of R crystals by approximately a factor of 3 and 2, respectively, while both maintaining noncooperative oxygenation. These effects are observed regardless of whether the effectors are co-crystallized or soaked into the effector-free protein crystals with a different lattice, confirming that the observed affinity reduction is induced by the BZF derivatives and not by crystal packing forces. Our findings, combined with available co-crystal structural data, suggest that the BZF derivatives lower the O affinity of the R-quaternary structure of Hb through structural constraints imposed by a quaternary shift slightly toward T. Additionally, since no co-crystal of R-state Hb with the effector inositol hexakisphosphate (IHP) is available, we only present an IHP-soaking experiment showing little change in O affinity, and poor IHP binding to the R crystal structure of horse Hb is suggested.
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http://dx.doi.org/10.1002/pro.5232 | DOI Listing |
Crit Rev Biochem Mol Biol
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The Salk Institute for Biological Studies, La Jolla, California, USA.
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December 2024
Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, USA; Center for Computational and Genomic Medicine, Department of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. Electronic address:
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View Article and Find Full Text PDFProtein Sci
January 2025
Division of Biophysics, Department of Physiology, Jichi Medical University, Shimotsuke, Tochigi, Japan.
Much is known about how allosteric effectors influence the equilibrium between the relaxed (R) and tense (T) states of hemoglobin (Hb), but little is known about how and to what extent the effectors lower the intrinsic O affinity of each allosteric state, especially the R-state. Here, we provide a thorough characterization of the O equilibria of effector-bound and unbound R-quaternary form crystals of horse Hb without a quaternary structural switching. In the absence of effectors, R crystals of horse Hb were shown to bind O noncooperatively with a very high affinity virtually identical to that of R crystals of human Hb.
View Article and Find Full Text PDFbioRxiv
November 2024
Department of Biochemistry, Biophysics, and Chemical Biology, University of Pennsylvania, Philadelphia, PA, 19104-6059.
Given the prominence of G protein coupled receptors (GPCRs) as drug targets, targeting their immediate downstream effectors, G proteins, could be of immense therapeutic value. The discovery that the natural product YM-254890 (YM) can arrest uveal melanoma by specifically inhibiting constitutively active Gq/11without impacting other G protein families demonstrates the potential of this approach. However, efforts to find other G protein family-specific inhibitors have had limited success.
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