Cone snails are venomous marine gastropods comprising more than 950 species widely distributed across different habitats. Their conical shells are remarkably similar to those of other invertebrates in terms of color, pattern, and size. For these reasons, assigning taxonomic signatures to cone snail shells is a challenging task. In this report, we propose an ensemble learning strategy based on the combination of Random Forest (RF) and XGBoost (XGB) methods. We used 47,600 cone shell images of uniform size (224 x 224 pixels), which were split into an 80:20 train-test ratio. Prior to performing subsequent operations, these images were subjected to pre-processing and transformation. After applying a deep learning approach (Visual Geometry Group with a 16-layer deep model architecture) for feature extraction, model specificity was further assessed by including multiple related and unrelated seashell images. Both classifiers demonstrated comparable recognition ability on random test samples. The evaluation results suggested that RF outperformed XGB due to its high accuracy in recognizing Conus species, with an average precision of 95.78%. The area under the receiver operating characteristic curve was 0.99, indicating the model's optimal performance. The learning and validation curves also demonstrated a robust fit, with the training score reaching 1 and the validation score gradually increasing to 95 as more data was provided. These values indicate a well-trained model that generalizes effectively to validation data without significant overfitting. The gradual improvement in the validation score curve is crucial for ensuring model reliability and minimizing the risk of overfitting. Our findings revealed an interactive visualization. The performance of our proposed model suggests its potential for use with datasets of other mollusks, and optimal results may be achieved for their categorization and taxonomical characterization.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11627371 | PMC |
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0313329 | PLOS |
Glob Chang Biol
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U.S. Environmental Protection Agency, Office of Research and Development, Center for Public Health and Environmental Assessment, Durham, North Carolina, USA.
Changes in temperature and precipitation are already influencing US forests and that will continue in the future even as we mitigate climate change. Using spatiotemporally matched data for mean annual temperature (MAT) and mean annual precipitation (MAP), we used simulated annealing to estimate critical thresholds for changes in the growth and survival of roughly 150 tree species (153 spp. for growth, 159 spp.
View Article and Find Full Text PDFPLoS One
December 2024
National Center for Bioinformatics, Quaid-i-Azam University, Islamabad, Pakistan.
Cone snails are venomous marine gastropods comprising more than 950 species widely distributed across different habitats. Their conical shells are remarkably similar to those of other invertebrates in terms of color, pattern, and size. For these reasons, assigning taxonomic signatures to cone snail shells is a challenging task.
View Article and Find Full Text PDFSci Total Environ
December 2024
Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
Mol Biol Evol
August 2024
Department of Biochemistry, University of Utah, Salt Lake City, UT 84112, USA.
J Genet Eng Biotechnol
June 2024
Zoology Department, Faculty of Science, Al-Azhar University, Assiut Branch 71524, Assuit, Egypt; Department of Biomedical Sciences, College of Clinical Pharmacy, King Faisal University, 31982, Saudi Arabia.
Background: Venomous marine cone snails produce unique neurotoxins called conopeptides or conotoxins, which are valuable for research and drug discovery. Characterizing Conus venom is important, especially for poorly studied species, as these tiny and steady molecules have considerable potential as research tools for detecting new pharmacological applications. In this study, a worm-hunting cone snail, Conus flavidus inhabiting the Red Sea coast were collected, dissected and the venom gland extraction was subjected to proteomic analysis to define the venom composition, and confirm the functional structure of conopeptides.
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