The potential energy landscape (PEL) formalism is a powerful tool within statistical mechanics to study the thermodynamic properties of classical low-temperature liquids and glasses. Recently, the PEL formalism has been extended to liquids/glasses that obey quantum mechanics, but applications have been limited to atomistic model liquids. In this work, we extend the PEL formalism to liquid/glassy water using path-integral molecular dynamics (PIMD) simulations, where nuclear quantum effects (NQE) are included. Our PIMD simulations, based on the q-TIP4P/F water model, show that the PEL of quantum water is both Gaussian and anharmonic. Importantly, the ring-polymers associated to the O/H atoms in the PIMD simulations, collapse at the local minima of the PEL (inherent structures, IS) for both liquid and glassy states. This allows us to calculate, analytically, the IS vibrational density of states (IS-VDOS) of the ring-polymer system using the IS-VDOS of classical water (obtained from classical MD simulations). The role of NQE on the structural properties of liquid/glassy water at various pressures are discussed in detail. Overall, our results demonstrate that the PEL formalism can effectively describe the behavior of molecular liquids at low temperatures and in the glass states, regardless of whether the liquid/glass obeys classical or quantum mechanics.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11618503 | PMC |
http://dx.doi.org/10.1038/s42004-024-01342-9 | DOI Listing |
Commun Chem
December 2024
Department of Physics, Brooklyn College of the City University of New York, Brooklyn, NY, 11210, USA.
The potential energy landscape (PEL) formalism is a powerful tool within statistical mechanics to study the thermodynamic properties of classical low-temperature liquids and glasses. Recently, the PEL formalism has been extended to liquids/glasses that obey quantum mechanics, but applications have been limited to atomistic model liquids. In this work, we extend the PEL formalism to liquid/glassy water using path-integral molecular dynamics (PIMD) simulations, where nuclear quantum effects (NQE) are included.
View Article and Find Full Text PDFJ Chem Phys
April 2024
Department of Physics, Brooklyn College of the City University of New York, Brooklyn, New York 11210, USA.
The potential energy landscape (PEL) formalism is a tool within statistical mechanics that has been used in the past to calculate the equation of states (EOS) of classical rigid model liquids at low temperatures, where computer simulations may be challenging. In this work, we use classical molecular dynamics (MD) simulations and the PEL formalism to calculate the EOS of the flexible q-TIP4P/F water model. This model exhibits a liquid-liquid critical point (LLCP) in the supercooled regime, at (Pc = 150 MPa, Tc = 190 K, and ρc = 1.
View Article and Find Full Text PDFCommun Chem
February 2024
Department of Physics, Brooklyn College of the City University of New York, Brooklyn, NY, 11210, USA.
Amorphous ices are usually classified as belonging to low-density or high-density amorphous ice (LDA and HDA) with densities ρ ≈ 0.94 g/cm and ρ ≈ 1.15-1.
View Article and Find Full Text PDFJ Chem Theory Comput
March 2024
Department of Physics, Brooklyn College of the City University of New York, Brooklyn, New York 11210, United States.
The potential energy landscape (PEL) formalism has been used in the past to describe the behavior of low-temperature liquids and glasses. Here, we extend the PEL formalism to describe the behavior of liquids and glasses that obey quantum mechanics. In particular, we focus on the (i) harmonic and (ii) Gaussian approximations of the PEL, which have been commonly used to describe classical systems, and show how these approximations can be applied to quantum liquids/glasses.
View Article and Find Full Text PDFMicroorganisms
July 2023
Departments of Plant Science, Tennessee State University, Campus Box 9543, Nashville, TN 37209, USA.
(formally ) causes disease on diverse plant species by synthesizing and secreting copious amount of plant-cell-wall-degrading exoenzymes including pectate lyases, polygalacturonases, cellulases, and proteases. Exoenzyme production and virulence are controlled by many factors of bacterial, host, and environmental origin. The ion channel forming the magnesium, nickel, and cobalt transporter CorA is required for exoenzyme production and full virulence in strain Ecc71.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!