Background: Rapidly identifying pathogens and determining their antimicrobial susceptibilities using samples directly from flagged blood culture bottles pose significant challenges for clinical laboratories. Thus, a cost-effective and efficient sample-processing method is urgently needed to address this issue. To fulfill this need, we developed a novel protocol to rapidly identify pathogens and determine their antimicrobial susceptibilities using samples directly from blood culture bottles.
Methods: Samples were either processed by the Sepsityper kit or our in-house methods. In our approach, we processed the samples using either a nonionic surfactant (Triton X-100) or a NaOH-sodium dodecyl sulfate (SDS) solution, followed by membrane filtration (MF) and centrifugation. Subsequently, the samples were analyzed using MALDI-TOF mass spectrometry (MS) for identification and the Vitek® 2 for antimicrobial susceptibility determination.
Results: In this study, 122 clinical blood culture samples were analyzed, and our MF protocol displayed enhanced accuracy in identifying gram-positive organisms (n = 58) and gram-negative bacilli (n = 64) compared to the Sepsityper method. In particular, the Triton-MF and SDS-MF techniques outperformed Sepsityper in identifying gram-negative bacilli, with accuracy rates of 92.2 %, 85.9 %, and 78.1 %, respectively. Notably, both the Triton-MF and SDS-MF methods exhibited high categorical agreement (CA) for antimicrobial susceptibility testing (AST) for carbapenem against Enterobacterales, with CAs of 100 % and 98.7 %, respectively. Additionally, both methods exhibited a perfect CA and essential agreement of 100 % for Enterococcus faecium AST for vancomycin.
Conclusion: These findings strongly indicate that our MF methods have the potential to streamline the identification and AST of bacteria in positive blood cultures.
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http://dx.doi.org/10.1016/j.jmii.2024.11.007 | DOI Listing |
Best Pract Res Clin Gastroenterol
December 2024
Department of Gastrointestinal Surgery and Solid Organ Transplant, Amrita Institute of Medical Sciences and Research Centre, Amrita University, Kochi, Kerala, India. Electronic address:
STAR Protoc
December 2024
State Key Laboratory of Experimental Hematology, Haihe Laboratory of Cell Ecosystem, Senior Department of Hematology, Fifth Medical Center, Medical Innovation Research Department, Chinese PLA General Hospital, Beijing 100071, China.
Deciphering the origins of innate lymphoid cells (ILCs) is critical for a deeper understanding of innate immunity. Here, we present a protocol for assessing ILC potential of human embryonic resources. We describe steps for identifying lymphoid progenitors in human embryonic tissues, then culturing mature ILCs in vitro, and identifying characteristics and functions of different cultured ILC subsets using cellular indexing of transcriptomes and epitopes (CITE)-sequencing and flow cytometry analysis.
View Article and Find Full Text PDFClin Infect Dis
December 2024
Department of Infectious Diseases, Danderyd Hospital, Stockholm, Sweden.
Background: Endocarditis occurs in approximately 10-15% of patients with Staphylococcus aureus bacteremia. Short time to positivity (TTP) in blood culture flasks has been linked to endocarditis in smaller studies. This study evaluated the association between TTP and endocarditis in S.
View Article and Find Full Text PDFBlood Adv
December 2024
Walter and Eliza Hall Institute of Medical Research, Parkville, Australia.
Haemolytic disease of the foetus and newborn (HDFN) due to Rhesus D (RhD) antigen mismatch between the mother and foetus has been a significant cause of neonatal jaundice, recurrent miscarriage and stillbirth throughout history. Anti-RhD prophylaxis using polyclonal immunoglobulin G (RhD-pIgG) derived from the plasma of RhD-negative donors immunised with RhD-positive red blood cells (RBCs), has reduced the incidence of HDFN, but this approach is currently restricted to developed countries. Monoclonal antibodies (mAbs) offer a promising alternative to address this pressing need, but prior attempts to develop effective anti-RhD mAbs have failed, in some cases due to differences in fucosylation patterns between mAbs produced in cell lines and RhD-pIgG.
View Article and Find Full Text PDFMedicine (Baltimore)
December 2024
University of Pennsylvania, Philadelphia, PA.
Bacterial meningitis causes significant morbidity and mortality in infants. Lumbar punctures are often deferred until the results of blood cultures are known and sometimes not considered, making this population susceptible to a missed diagnosis. There are few studies describing the epidemiology of neonatal meningitis in quaternary neonatal intensive care unit settings.
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