AI Article Synopsis

  • Proteins have complex structures that determine their functions, making their structural analysis essential for understanding biological processes.
  • Vibrational circular dichroism (VCD) is a technique that improves upon classical infrared spectroscopy but struggles with low signal intensity and lengthy measurement times.
  • A new optical setup using a quantum cascade laser allows for faster measurements of protein structures, achieving high-resolution data in as little as 5 minutes, which could enhance the study of dynamic protein processes.

Article Abstract

Proteins are characterized by their complex levels of structures, which in turn define their function. Understanding and evaluating these structures is therefore crucial to illuminating biological processes. One of the possible analytical methods is vibrational circular dichroism (VCD), which expands the structural sensitivity of classical infrared (IR) absorbance spectroscopy by the chiral sensitivity of circular dichroism. While this technique is powerful, it is plagued by low signal intensities and long measurement times. Here we present an optical setup leveraging the high brilliance of a quantum cascade laser to measure proteins in DO at a path length of 204 μm. It was compared to classical Fourier-transform infrared spectroscopy (FT-IR) in terms of noise levels and in its applicability to secondary structure elucidation of proteins. Protein concentrations as low as 2 mg/mL were accessible by the laser-based system at a measurement time of 1 h. Further increase of the time resolution was possible by adapting the emission to cover only the amide I' band. This allowed for the collection of spectral data at a measurement time of 5 min without a loss of performance. With this high time resolution, we are confident that dynamic processes of protein can now be monitored by VCD, increasing our understanding of these reactions.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11635754PMC
http://dx.doi.org/10.1021/acs.analchem.4c03498DOI Listing

Publication Analysis

Top Keywords

circular dichroism
12
quantum cascade
8
cascade laser
8
vibrational circular
8
measurement time
8
time resolution
8
external cavity
4
cavity quantum
4
laser vibrational
4
dichroism spectroscopy
4

Similar Publications

Chermesins I-N: Bioactive spiromeroterpenoids from the marine-sourced fungus Penicillium chermesinum AS-400.

Phytochemistry

January 2025

CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao 266071, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Wenhai Road 1, Qingdao 266237, China; University of Chinese Academy of Sciences, Yuquan Road 19A, Beijing 100049, China. Electronic address:

Six previously undescribed spiromeroterpenoids, chermesins I-N (1-6), were isolated and identified from the marine-sourced fungus Penicillium chermesinum AS-400. Their structures were determined by nuclear magnetic resonance and mass spectroscopic data, and the relative and absolute configurations were confirmed based on nuclear Overhauser effect spectroscopic experiments, electronic circular dichroism (ECD) calculations and X-ray crystallographic analysis, and by comparisons of ECD Cotton effects with those of known congeners as well. Structurally, compound 1 represents the first example of spiromeroterpenoid demethylated at C-4.

View Article and Find Full Text PDF

Nidustrin A, cysteine-retained emestrin with a unique 18-membered macrocyclic lactone from the endophytic fungus Aspergillus nidulans.

Bioorg Chem

December 2024

Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, PR China. Electronic address:

Nidustrin A (1), the first cysteine-retained emestrin featuring a unique sulfur-containing 18-membered macrocyclic lactone, along with four biogenetically related compounds (2-5), and one known analogue secoemestrin C (6), were isolated from the large-scale culture of Aspergillus nidulans, an endophytic fungus derived from the Whitmania pigra. Compounds 2 and 3 represent the second examples of noremestrin besides the previously reported noremestrin A, and the single crystal X-ray diffraction analysis of compound 2 provided solid evidence for the intriguing skeleton of noremestrin. Their structures were determined by extensive spectroscopic data, electronic circular dichroism calculations, and single-crystal X-ray diffraction.

View Article and Find Full Text PDF

Secupyritines A‒C are unique polycyclic Securinega alkaloids isolated from medicinal plant Flueggea suffruticosa. They feature a distinctive 6/6/6/5/6 fused pentacyclic ring system with a highly strained 2-oxa-6-aza[4.4.

View Article and Find Full Text PDF

Electronic circular dichroism (ECD) spectra contain key information about molecular chirality by discriminating the absolute configurations of chiral molecules, which is crucial in asymmetric organic synthesis and the drug industry. However, existing predictive approaches lack the consideration of ECD spectra owing to the data scarcity and the limited interpretability to achieve trustworthy prediction. Here we establish a large-scale dataset for chiral molecular ECD spectra and propose ECDFormer for accurate and interpretable ECD spectrum prediction.

View Article and Find Full Text PDF

In this study, novel 2-styrylquinoline derivatives possessing a planar aromatic system and a flexible side chain with an amino substituent were designed and synthesized as DNA-intercalating antitumor agents. The cytotoxic activity of the synthesized compounds was evaluated against four cancer cell lines including MCF-7 (breast cancer cells), A549 (lung epithelial cancer cells), HCT116 (colon cancer cells) and normal cell line L929 (mouse fibroblast cell line). The results displayed that the anti-cancer activity of the target quinolines is sensitive to the lipophilic nature of the C-6 and C-7 quinoline substituents.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!