In this study, explainable machine learning techniques are applied to predict the toxicity of mussels in the Gulf of Trieste (Adriatic Sea) caused by harmful algal blooms. By analysing a newly created 28-year dataset containing records of toxic phytoplankton in mussel farming areas and diarrhetic shellfish toxins in mussels (Mytilus galloprovincialis), we train and evaluate the performance of machine learning (ML) models to accurately predict diarrhetic shellfish poisoning (DSP) events. Based on the F1 score, the random forest model provided the best prediction of toxicity results at which the harvesting of mussels is stopped according to EU regulations. Explainability methods such as permutation importance and Shapley Additive Explanations (SHAP) identified key species (Dinophysis fortii and D. caudata) and environmental factors (salinity, river discharge and precipitation) as the best predictors of DSP toxins above regulatory limits. These findings are important for improving early warning systems, which until now were based solely on empirically defined alert abundances of DSP species. They provide experts, aquaculture practitioners, and authorities with additional information to make informed risk management decisions.
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http://dx.doi.org/10.1016/j.hal.2024.102728 | DOI Listing |
Genet Med
December 2024
Vanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, TN; Center for Digital Genomic Medicine, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN; Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN; Department of Psychiatry and Behavioral Sciences, Vanderbilt University Medical Center, Nashville, TN. Electronic address:
Purpose: The value of genetic information for improving the performance of clinical risk prediction models has yielded variable conclusions. Many methodological decisions have the potential to contribute to differential results. We performed multiple modeling experiments integrating clinical and demographic data from electronic health records (EHR) with genetic data to understand which decisions may affect performance.
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December 2024
Interventional Oncology, Johnson & Johnson Enterprise Innovation, Inc, 10th Floor 255 Main St, 02142, Cambridge, Boston, MA, USA.
The introduction of anti-PD-1/PD-L1 therapies revolutionized treatment for advanced non-small cell lung cancer (NSCLC), yet response rates remain modest, underscoring the need for predictive biomarkers. While a T cell inflamed gene expression profile (GEP) has predicted anti-PD-1 response in various cancers, it failed in a large NSCLC cohort from the Stand Up To Cancer-Mark (SU2C-MARK) Foundation. Re-analysis revealed that while the T cell inflamed GEP alone was not predictive, its performance improved significantly when combined with gene signatures of myeloid cell markers.
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December 2024
Department of Medical Ultrasound, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, No. 16766, Jingshi Road, Jinan, 250014, Shandong, People's Republic of China.
This study aimed to explore a deep learning radiomics (DLR) model based on grayscale ultrasound images to assist radiologists in distinguishing between benign breast lesions (BBL) and malignant breast lesions (MBL). A total of 382 patients with breast lesions were included, comprising 183 benign lesions and 199 malignant lesions that were collected and confirmed through clinical pathology or biopsy. The enrolled patients were randomly allocated into two groups: a training cohort and an independent test cohort, maintaining a ratio of 7:3.
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December 2024
Computer Engineering Department, Lorestan University, Khorramabad, Iran.
This paper presents a slot antenna integrated with a split ring resonator (SRR) and feed line, designed to achieve a high Q-factor while maximizing channel capacity utilization. By incorporating a lens into the dielectric resonator antenna (DRA), we enhance both bandwidth and directivity, with the dielectric material's permittivity serving as a key control parameter for radiation characteristics. We explore water and ethanol as controllable dielectrics within the terahertz (THz) frequency range (0.
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December 2024
Department of Orthopaedics, Quanzhou First Hospital Affiliated to Fujian Medical University, Quanzhou, China.
Osteosarcoma (OS) is the most prevalent secondary sarcoma associated with retinoblastoma (RB). However, the molecular mechanisms driving the interactions between these two diseases remain incompletely understood. This study aims to explore the transcriptomic commonalities and molecular pathways shared by RB and OS, and to identify biomarkers that predict OS prognosis effectively.
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