Onsager's variational principle provides us with a systematic way to derive dynamical equations for various soft matter and active matter. By reformulating the Onsager-Machlup variational principle (OMVP), which is a time-global principle, we propose a new method to incorporate thermal fluctuations. To demonstrate the utility of the statistical formulation of OMVP, we obtain the diffusion constant of a Brownian particle embedded in a viscous fluid by maximizing the modified Onsager-Machlup integral for the surrounding fluid. We also apply our formulation to a Brownian particle in a steady shear flow, which is a typical nonequilibrium system. Possible extensions of our formulation to internally driven active systems are also discussed.
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http://dx.doi.org/10.1103/PhysRevE.110.044104 | DOI Listing |
Interdiscip Sci
December 2024
Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, Anhui, China.
High-throughput sequencing has exponentially increased peptide sequences, necessitating a computational method to identify multi-functional therapeutic peptides (MFTP) from their sequences. However, existing computational methods are challenged by class imbalance, particularly in learning effective sequence representations. To address this, we propose PSCFA, a prototypical supervised contrastive learning with a feature augmentation method for MFTP prediction.
View Article and Find Full Text PDFVariational autoencoders (VAEs) employ Bayesian inference to interpret sensory inputs, mirroring processes that occur in primate vision across both ventral (Higgins et al., 2021) and dorsal (Vafaii et al., 2023) pathways.
View Article and Find Full Text PDFPLoS One
December 2024
Department of Mathematics, Art and Science Faculty, Siirt University, Siirt, Istanbul, Turkey.
Fractional nonlinear partial differential equations are used in many scientific fields to model various processes, although most of these equations lack closed-form solutions. For this reason, methods for approximating solutions that occasionally yield closed-form solutions are crucial for solving these equations. This study introduces a novel technique that combines the residual function and a modified fractional power series with the Elzaki transform to solve various nonlinear problems within the Caputo derivative framework.
View Article and Find Full Text PDFPhys Rev E
November 2024
GRASP, Institute of Physics B5a, University of Liège, B4000 Liège, Belgium.
Granular fluids, as defined by a collection of moving solid particles, is a paradigm of a dissipative system out of equilibrium. Inelastic collisions between particles is the source of dissipation, and is the origin of a transition from a gas to a liquidlike state. This transition can be triggered by an increase of the solid fraction.
View Article and Find Full Text PDFSci Rep
December 2024
School of Civil Engineering and Architecture, University of Jinan, Jinan, 250022, China.
In this paper, the free vibration of piezoelectric nanobeams considering static flexoelectric, dynamic flexoelectric, and surface effects is studied. Based on the theories of the Timoshenko beam and Euler-Bernoulli beam, a theoretical model of flexoelectric nanobeams is established and the governing equations and boundary conditions of this model are derived using the variational principle. Then, the analytical solution of the frequency equation is obtained by using the Navier method.
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