Modelling Data (MODA) reporting guidelines have been proposed for common terminology and for recording metadata for physics-based materials modelling and simulations in a CEN Workshop Agreement (CWA 17284:2018). Their purpose is similar to that of the Quantitative Structure-Activity Relationship (QSAR) model report form (QMRF) that aims to increase industry and regulatory confidence in QSAR models, but for a wider range of model types. Recently, the WorldFAIR project's nanomaterials case study suggested that both QMRF and MODA templates are an important means to enhance compliance of nanoinformatics models, and their underpinning datasets, with the FAIR principles (Findable, Accessible, Interoperable, Reusable). Despite the advances in computational modelling of materials properties and phenomena, regulatory uptake of predictive models has been slow. This is, in part, due to concerns about lack of validation of complex models and lack of documentation of scientific simulations. The models are often complex, output can be hardware- and software-dependent, and there is a lack of shared standards. Despite advocating for standardised and transparent documentation of simulation protocols through its templates, the MODA guidelines are rarely used in practice by modellers because of a lack of tools for automating their creation, sharing, and storage. They also suffer from a paucity of user guidance on their use to document different types of models and systems. Such tools exist for the more well-established QMRF and have aided widespread implementation of QMRFs. To address this gap, a simplified procedure and online tool, Easy-MODA, has been developed to guide users through MODA creation for physics-based and data-based models, and their various combinations. Easy-MODA is available as a web-tool on the Enalos Cloud Platform (https://www.enaloscloud.novamechanics.com/insight/moda/). The tool streamlines the creation of detailed MODA documentation, even for complex multi-model workflows, and facilitates the registration of MODA workflows and documentation in a database, thereby increasing their Findability and thus Re-usability. This enhances communication, interoperability, and reproducibility in multiscale materials modelling and improves trust in the models through improved documentation. The use of the Easy-MODA tool is exemplified by a case study for nanotoxicity evaluation, involving interlinked models and data transformation, to demonstrate the effectiveness of the tool in integrating complex computational methodologies and its significant role in improving the FAIRness of scientific simulations.
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http://dx.doi.org/10.1016/j.csbj.2024.10.018 | DOI Listing |
Sci Rep
December 2024
College of Economics and Management, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
In light of the Chinese government's dual carbon goals, achieving cleaner production activities has become a central focus, with regional environmental collaborative governance, including the management of agricultural carbon reduction, emerging as a mainstream approach. This study examines 268 prefecture-level cities in China, measuring the carbon emission efficiency of city agriculture from 2001 to 2022. By integrating social network analysis and a modified gravity model, the study reveals the characteristics of the spatial association network of city agricultural carbon emission efficiency in China.
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December 2024
School of Physical Education, Southwest Petroleum University, Chengdu, 610500, China.
Stroke is one of the leading causes of death in developing countries, and China bears the largest global burden of stroke. This study aims to investigate the relationship between different dimensions of physical activity levels and stroke risk using a nationally representative database. We performed a cross-sectional analysis using data from the China Health and Retirement Longitudinal Study (CHARLS) 2020.
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December 2024
KAUST Center of Excellence for Smart Health (KCSH), King Abdullah University of Science and Technology, Thuwal, 23955, Saudi Arabia.
Analyzing microbial samples remains computationally challenging due to their diversity and complexity. The lack of robust de novo protein function prediction methods exacerbates the difficulty in deriving functional insights from these samples. Traditional prediction methods, dependent on homology and sequence similarity, often fail to predict functions for novel proteins and proteins without known homologs.
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December 2024
School of Mechanical Engineering, Liaoning Engineering Vocational College, Tieling, 112008, Liaoning, People's Republic of China.
The paper proposes a multi-rigid-body system state identification method based on self-healing model in order to improve the accuracy and reliability of CNC machine tools. Firstly, considering the influence of the joint surface, the Lagrange method is used to establish the mechanical model of the multi-rigid-body system. We input acceleration information and use the second-order modulation function to complete the online real-time identification of the joint surface parameters, thereby establishing the self-healing mechanical model of the multi-rigid-body system.
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December 2024
Merchant Marine College, Shanghai Maritime University, Shanghai, 201306, China.
The intelligent identification of wear particles in ferrography is a critical bottleneck that hampers the development and widespread adoption of ferrography technology. To address challenges such as false detection, missed detection of small wear particles, difficulty in distinguishing overlapping and similar abrasions, and handling complex image backgrounds, this paper proposes an algorithm called TCBGY-Net for detecting wear particles in ferrography images. The proposed TCBGY-Net uses YOLOv5s as the backbone network, which is enhanced with several advanced modules to improve detection performance.
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