Computational Characterization of the DAD Photoisomerization: Functionalization, Protonation, and Solvation Effects.

J Phys Chem B

Departamento de Química Física de Materiales, Instituto de Química Física Blas Cabrera, CSIC, 28006 Madrid, Spain.

Published: November 2024

Photoswitches are becoming increasingly popular in pharmacology due to the possibility of modifying their activity with light. Hence, it is crucial to understand the photophysics of these compounds to identify promising light-activated drugs. We focused our study on DAD, an azobenzene derivative that, according to a previous experimental investigation, can restore visual function in blind mice due to - photoisomerization upon light absorption. With the present computational study, we aim to characterize the absorption spectrum of DAD, and to understand its photoisomerization mechanism by means of conformational search analysis, quantum mechanical (QM) and hybrid QM/continuum calculations, and classical molecular dynamics simulations. Moreover, we explored the effect of the derivation (DAD vs azobenzene), the protonation (DAD vs DADH, the two possible protonation states) and the solvation (vacuum vs water) on the photoisomerization. Similarly to azobenzene, we showed that the photoisomerization of both protonation states of DAD begin with the population of the bright state. Then, it crosses to the surface and relaxes along the rotation of the azo dihedral to a / crossing point. The latter is close to a transition state that connects the and geometries on the ground state. Finally, our results suggested that amino derivation, nonprotonation and water solvation could improve the quantum yield of the photoisomerization.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11613546PMC
http://dx.doi.org/10.1021/acs.jpcb.4c05179DOI Listing

Publication Analysis

Top Keywords

dad azobenzene
8
protonation states
8
dad
6
photoisomerization
6
computational characterization
4
characterization dad
4
dad photoisomerization
4
photoisomerization functionalization
4
protonation
4
functionalization protonation
4

Similar Publications

Computational Characterization of the DAD Photoisomerization: Functionalization, Protonation, and Solvation Effects.

J Phys Chem B

November 2024

Departamento de Química Física de Materiales, Instituto de Química Física Blas Cabrera, CSIC, 28006 Madrid, Spain.

Photoswitches are becoming increasingly popular in pharmacology due to the possibility of modifying their activity with light. Hence, it is crucial to understand the photophysics of these compounds to identify promising light-activated drugs. We focused our study on DAD, an azobenzene derivative that, according to a previous experimental investigation, can restore visual function in blind mice due to - photoisomerization upon light absorption.

View Article and Find Full Text PDF

Photopharmacology has yielded compounds that have potential to restore impaired visual responses resulting from outer retinal degeneration diseases such as retinitis pigmentosa. Here we evaluate two photoswitchable azobenzene ion channel blockers, DAQ and DAA for vision restoration. DAQ exerts its effect primarily on RGCs, whereas DAA induces light-dependent spiking primarily through amacrine cell activation.

View Article and Find Full Text PDF

Photopharmacological control of neuronal activity using synthetic photochromic ligands, or photoswitches, is a promising approach for restoring visual function in patients suffering from degenerative retinal diseases. Azobenzene photoswitches, such as AAQ and DENAQ, have been shown to restore the responses of retinal ganglion cells to light in mouse models of retinal degeneration but do not recapitulate native retinal signal processing. Here, we describe diethylamino-azo-diethylamino (DAD), a third-generation photoswitch that is capable of restoring retinal ganglion cell light responses to blue or white light.

View Article and Find Full Text PDF

Background: 3,3'-Dimethylbenzidene (DMB) is a substance classified into the group of carcinogens. The value of maximum admissible concentration for this substance in the workplace air is not specified in Poland. Bearing in mind that DMB is used in domestic companies there is a need to develop a sensitive method for determining 3,3'-dimethylbenzidine in the work environment.

View Article and Find Full Text PDF

Reaction of the potassium salt of amido ligand [Ph(2)Si(NAr)(2)](2-) (L, Ar = 2,6-iPr(2)C(6)H(3)) and LnI(2)(thf)(2) (Ln = Sm, Yb) gives sandwich complexes [(L)(2)Ln{K(Et(2)O)}(2)] (Ln = Sm (2), Yb (3)) with potassium-arene pi interactions. Reaction of 2 with azobenzene gave the dimeric samarium cluster [(L)(2)Sm(2)(mu-eta(2):eta(2)-N(2)Ph(2))(2){K(thf)(2)}(2)] (4) and the tetrameric [(L)Sm(4) (mu-eta(2):eta(2)-N(2)Ph(2))(3) (mu(3)-NPh)(2)(thf)(3)] (5). On the other hand, the reaction of 2 with alpha-diimines ligands ArN=CRCR=NAr (DAD, R = H, Me) gives two Sm(III) complexes: polymeric [(L)Sm{(ArN)RC=CR(NAr)}K](n) (R = H (6), Me (7)) assembled through cation-pi interactions and byproduct [{(L)(2)Sm}{K(thf)(6)}] (8).

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!