In this study, we present results from path integral molecular dynamics simulations that describe the characteristics of the quantum spatial delocalizations of protons participating in OH bonds in (MeOH)2H+ and in (MeOH)3H+. The characterization was carried out by examining the overall structures of the corresponding isomorphic polymers. To introduce full flexibility in the force treatment, we have adopted a neural network fitting procedure based on second-order Møller-Plesset perturbation theory predictions. For the dimer case, we found that the spatial extent of the shared connective proton can be portrayed in terms of a prolate-like structure with typical dimensions of ∼0.1 Å. On the other hand, the dangling polymers lie confined within a thin spherical layer, spread over length scales of the order of ∼0.25 Å. In contrast, connective protons in (MeOH)3H+ exhibit larger delocalizations along the O-H bond and more localized ones along perpendicular directions, compared to their dangling counterparts. We also examined the characteristics of the relative propensities of H and D isotopes to be localized in dangling and connective positions. Physical interpretations of the different thermodynamic trends are provided in terms of the local geometrical characteristics and of the strengths of the corresponding intermolecular connectivities.
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http://dx.doi.org/10.1063/5.0234264 | DOI Listing |
J Chem Phys
November 2024
Departamento de Física de la Materia Condensada, GIyA, CAC-CNEA, 1650 San Martín, Buenos Aires, Argentina, Instituto de Nanociencia y Nanotecnología, CNEA-CONICET, Buenos Aires, Argentina.
In this study, we present results from path integral molecular dynamics simulations that describe the characteristics of the quantum spatial delocalizations of protons participating in OH bonds in (MeOH)2H+ and in (MeOH)3H+. The characterization was carried out by examining the overall structures of the corresponding isomorphic polymers. To introduce full flexibility in the force treatment, we have adopted a neural network fitting procedure based on second-order Møller-Plesset perturbation theory predictions.
View Article and Find Full Text PDFNature
May 2024
Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, MO, USA.
Biogenic monoamines-vital transmitters orchestrating neurological, endocrinal and immunological functions-are stored in secretory vesicles by vesicular monoamine transporters (VMATs) for controlled quantal release. Harnessing proton antiport, VMATs enrich monoamines around 10,000-fold and sequester neurotoxicants to protect neurons. VMATs are targeted by an arsenal of therapeutic drugs and imaging agents to treat and monitor neurodegenerative disorders, hypertension and drug addiction.
View Article and Find Full Text PDFNeuroscience
November 2023
Department of Biology, Grinnell College, Grinnell, IA 50112, United States. Electronic address:
At the vertebrate neuromuscular junction (NMJ), presynaptic homeostatic potentiation (PHP) refers to an increase in neurotransmitter release that restores the strength of synaptic transmission following a blockade of nicotinic acetylcholine receptors (nAChRs). Mechanisms informing the presynaptic terminal of the loss of postsynaptic receptivity remain poorly understood. Previous research at the mouse NMJ suggests that extracellular protons may function as a retrograde signal that triggers an upregulation of neurotransmitter output (measured by quantal content, QC) through the activation of acid-sensing ion channels (ASICs).
View Article and Find Full Text PDFeNeuro
December 2021
Genes Circuits Rhythms and Neuropathology, Brain Plasticity Unit, Unité Mixte de Recherche 8249, Centre National de la Recherche Scientifique, École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris, Paris Sciences et Lettres University, Paris F-75005, France
The V-ATPase is a highly conserved enzymatic complex that ensures appropriate levels of organelle acidification in virtually all eukaryotic cells. While the general mechanisms of this proton pump have been well studied, little is known about the specific regulations of neuronal V-ATPase. Here, we studied CG31030, a previously uncharacterized protein predicted from its sequence homology to be part of the V-ATPase family.
View Article and Find Full Text PDFJ Chem Phys
September 2021
Department of Chemistry, The University of Hong Kong, Hong Kong, People's Republic of China.
We present a novel theory and implementation for computing coupled electronic and quantal nuclear subsystems on a single potential energy surface, moving beyond the standard Born-Oppenheimer (BO) separation of nuclei and electrons. We formulate an exact self-consistent nucleus-electron embedding potential from the single product molecular wavefunction and demonstrate that the fundamental behavior of the correlated nucleus-electron can be computed for mean-field electrons that are responsive to a quantal anharmonic vibration of selected nuclei in a discrete variable representation. Geometric gauge choices are discussed and necessary for formulating energy invariant biorthogonal electronic equations.
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