In a perfect world, scientists would develop analyses that are guaranteed to reveal the ground truth of a research question. In reality, there are countless viable workflows that produce distinct, often conflicting, results. Although reproducibility places a necessary bound on the validity of results, it is not sufficient for claiming underlying validity, eventual utility, or generalizability. In this work we focus on how embracing variability in data analysis can improve the generalizability of results. We contextualize how design decisions in brain imaging can be made to capture variation, highlight examples, and discuss how variability capture may improve the quality of results.
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http://dx.doi.org/10.1038/s41467-024-53743-y | DOI Listing |
Interdiscip Sci
December 2024
School of Software, Henan Polytechnic University, Jiaozuo, 454003, China.
Structural variation (SV) is an important component of the diversity of the human genome. Many studies have shown that SV has a significant impact on human disease and is strongly associated with the development of cancer. In recent years, the Hi-C sequencing technique has been shown to be useful for detecting large-scale SVs, and several methods have been proposed for identifying SVs from Hi-C data.
View Article and Find Full Text PDFMed Phys
December 2024
Department of Electronics and Electrical Engineering, Indian Institute of Technology Guwahati, Assam, India.
Background: Measurement noise often leads to inaccurate shear wave phase velocity estimation in ultrasound shear wave elastography. Filtering techniques are commonly used for denoising the shear wavefields. However, these filters are often not sufficient, especially in fatty tissues where the signal-to-noise ratio (SNR) can be very low.
View Article and Find Full Text PDFJ Chem Phys
December 2024
Department of Chemical and Biomolecular Engineering, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Micron-scale colloidal particles with short-ranged attractions, e.g., colloids functionalized with single-stranded DNA oligomers, have emerged as a powerful platform for studying colloidal self-assembly phenomena with the long-term goal of identifying routes for metamaterial fabrication.
View Article and Find Full Text PDFJ Med Imaging (Bellingham)
November 2024
The NorthCap University, Department of Computer Science and Engineering, Gurugram, Haryana, India.
Purpose: Various brain atlases are available to parcellate and analyze brain connections. Most traditional machine learning and deep learning studies analyzing Attention Deficit Hyperactivity Disorder (ADHD) have used either one or two brain atlases for their analysis. However, there is a lack of comprehensive research evaluating the impact of different brain atlases and associated factors such as connectivity measures and dimension reduction techniques on ADHD diagnosis.
View Article and Find Full Text PDFACS Omega
December 2024
San Francisco State University, Department of Chemistry and Biochemistry, San Francisco, California 94132, United States.
Spermidine/spermine acetyltransferases (SSATs) and other types of polyamine acetyltransferases (PAATs) acetylate diamines and/or polyamines. These enzymes are evolutionarily related and belong to the Gcn5-related acetyltransferase (GNAT) superfamily, yet we lack a fundamental understanding of their substrate specificity and/or promiscuity toward different compounds. Many of these enzymes are known or are predicted to acetylate polyamines, but in the cell there are other types of compounds that contain moieties derived from polyamines that may be the native substrates for these enzymes.
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