Significance: Functional near-infrared spectroscopy (fNIRS) has been widely used to assess brain functional networks due to its superior ecological validity. Generally, fNIRS signals are sensitive to motion artifacts (MA), which can be removed by various MA correction algorithms. Yet, fNIRS signals may also undergo varying degrees of distortion due to MA correction, leading to notable alternation in functional connectivity (FC) analysis results.
Aim: We aimed to investigate the effect of different MA correction algorithms on the performance of brain FC and topology analyses.
Approach: We evaluated various MA correction algorithms on simulated and experimental datasets, including principal component analysis, spline interpolation, correlation-based signal improvement, Kalman filtering, wavelet filtering, and temporal derivative distribution repair (TDDR). The mean FC of each pre-defined network, receiver operating characteristic (ROC), and graph theory metrics were investigated to assess the performance of different algorithms.
Results: Although most algorithms did not differ significantly from each other, the TDDR and wavelet filtering turned out to be the most effective methods for FC and topological analysis, as evidenced by their superior denoising ability, the best ROC, and an enhanced ability to recover the original FC pattern.
Conclusions: The findings of our study elucidate the varying impact of MA correction algorithms on brain FC analysis, which could serve as a reference for choosing the most appropriate method for future FC research. As guidance, we recommend using TDDR or wavelet filtering to minimize the impact of MA correction in brain network analysis.
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http://dx.doi.org/10.1117/1.NPh.11.4.045006 | DOI Listing |
PLoS One
January 2025
LIB, Université de Bourgogne, Franche-Comté, Dijon, France.
The backbone extraction process is pivotal in expediting analysis and enhancing visualization in network applications. This study systematically compares seven influential statistical hypothesis-testing backbone edge filtering methods (Disparity Filter (DF), Polya Urn Filter (PF), Marginal Likelihood Filter (MLF), Noise Corrected (NC), Enhanced Configuration Model Filter (ECM), Global Statistical Significance Filter (GloSS), and Locally Adaptive Network Sparsification Filter (LANS)) across diverse networks. A similarity analysis reveals that backbones extracted with the ECM and DF filters exhibit minimal overlap with backbones derived from their alternatives.
View Article and Find Full Text PDFRev Alerg Mex
December 2024
Jefe del servicio de Alergia, Hospital Central del Instituto de Previsión Social (IPS), Paraguay.
Objective: To develop a treatment algorithm for patients with penicillin allergy.
Methods: Retrospective study, carried out in adult patients with penicillin allergy, who were in group 3 or 4 of the established classification, and attended the outpatient clinic of the Department of Pulmonology and Allergy of the Central Hospital of the Social Security Institute, between January 2021 and December 2022. Each patient underwent an amoxicillin provocation test, after obtaining informed consent.
Brief Bioinform
November 2024
Institute of Statistics and Big Data, Renmin University of China, No. 59 Zhongguancun Street, 100872 Beijing, China.
The spatial transcriptomics is a rapidly evolving biological technology that simultaneously measures the gene expression profiles and the spatial locations of spots. With progressive advances, current spatial transcriptomic techniques can achieve the cellular or even the subcellular resolution, making it possible to explore the fine-grained spatial pattern of cell types within one tissue section. However, most existing cell spatial clustering methods require a correct specification of the cell type number, which is hard to determine in the practical exploratory data analysis.
View Article and Find Full Text PDFPhys Rev Lett
December 2024
Department of Physics, Harvard University, Cambridge, Massachusetts 02138, USA.
Quantum error correction is believed to be essential for scalable quantum computation, but its implementation is challenging due to its considerable space-time overhead. Motivated by recent experiments demonstrating efficient manipulation of logical qubits using transversal gates [Bluvstein et al., Nature (London) 626, 58 (2024)NATUAS0028-083610.
View Article and Find Full Text PDFObjective To develop an algorithm, based on the voltage matrix, for detecting regular cochlear implant (CI) electrode position during the implantation procedure, tip fold-over or basal kinking for lateral-wall electrodes. The availability of an algorithm would be valuable in clinical routine, as incorrect positioning of the electrode array can potentially be recognized intraoperatively. Design In this retrospective study intraoperative voltage matrix and postoperative digital volume tomography of 525 CI recipients were analyzed.
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