Protocol for mapping T cell activation using single-cell RNA-seq.

STAR Protoc

CAS Key Laboratory of Computational Biology, Shanghai Institute of Nutrition and Health, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Shanghai 200031, China; School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China. Electronic address:

Published: December 2024

AI Article Synopsis

  • The text outlines a protocol for studying T cell activation using anti-CD3/CD28 stimulation, a common experimental method.
  • It provides a workflow that includes isolating human peripheral blood mononuclear cells (PBMCs), enriching CD4 T cells, and performing single-cell RNA sequencing (scRNA-seq).
  • For detailed procedures and execution of this protocol, the text refers to a more comprehensive source by Li et al.

Article Abstract

Stimulation of CD4 T cells with anti-CD3/CD28 is a commonly used model to study T cell activation. Here, we present a protocol for investigating T cell activation based on anti-CD3/CD28 bead stimulation and single-cell RNA sequencing (scRNA-seq). We describe the workflow from the isolation of human peripheral blood mononuclear cells (PMBCs) and CD4 T cell enrichment to anti-CD3/CD28 bead stimulation, scRNA-seq, and data analysis. For complete details on the use and execution of this protocol, please refer to Li et al..

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11533540PMC
http://dx.doi.org/10.1016/j.xpro.2024.103409DOI Listing

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