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Nanopore Data-Driven T2T Genome Assemblies of Strains.
J Fungi (Basel)
December 2024
Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
is a pathogenic fungus that infects flax and causes significant yield losses. In this study, we assembled the genomes of four highly virulent strains using the Oxford Nanopore Technologies (ONT, R10.4.
View Article and Find Full Text PDFPharmacogenomics is central to precision medicine, informing medication safety and efficacy. Pharmacogenomic diplotyping of complex genes requires full-length DNA sequences and detection of structural rearrangements. We introduce StarPhase, a tool that leverages PacBio HiFi sequence data to diplotype 21 CPIC Level A pharmacogenes and provides detailed haplotypes and supporting visualizations for HLA-A, HLA-B, and CYP2D6.
View Article and Find Full Text PDFChromosome X-wide common variant association study in autism spectrum disorder.
Am J Hum Genet
December 2024
The Centre for Applied Genomics, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada; Genetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada; McLaughlin Centre and Department of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada. Electronic address:
Autism spectrum disorder (ASD) displays a notable male bias in prevalence. Research into rare (<0.1) genetic variants on the X chromosome has implicated over 20 genes in ASD pathogenesis, such as MECP2, DDX3X, and DMD.
View Article and Find Full Text PDFCorrection: Characterization and whole-genome sequencing of an extreme arsenic tolerant SRS1 strain isolated from Savar area in Bangladesh.
Can J Microbiol
December 2024
Department of Biochemistry & Microbiology, School of Health & Life Sciences, North South University, Dhaka, Bangladesh.
An Investigation of Senftenberg Illnesses in the United States Linked to Peanut Butter-2022.
Foodborne Pathog Dis
December 2024
Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, Maryland, USA.
In 2022, the U.S. Food and Drug Administration (FDA), the Centers for Disease Control and Prevention (CDC), and state partners conducted a sample-initiated investigation of a multistate outbreak of Senftenberg illnesses linked to peanut butter.
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