A latent class analysis on a nationally representative Australian sample ( = 1000) identified four subgroups (i.e. classes), ranging from high to low concern about, and willingness to donate to, a national genomic repository under different forms of public and commercial management and access. The distribution of concerns and governance preferences across these classes was investigated. This added to previous research by indicating the degree to which extant concerns (e.g. corporate profiteering, discrimination by insurers) are held by different segments of the community. Based on the governance mechanisms that had widespread support across segments, the following recommendations are made to develop a trusted Australian genomic repository: the repository cannot be solely profit-driven; can utilise an access committee; protections (e.g. ensuring confidentiality of donors) may not require new legislation; data users cannot retain data for future research; the public should remain informed about the intended and/or actual benefits of research.
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http://dx.doi.org/10.1177/09636625241286369 | DOI Listing |
PeerJ
January 2025
Department of Computer Science, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America.
Despite the recent surge of viral metagenomic studies, it remains a significant challenge to recover complete virus genomes from metagenomic data. The majority of viral contigs generated from de novo assembly programs are highly fragmented, presenting significant challenges to downstream analysis and inference. To address this issue, we have developed Virseqimprover, a computational pipeline that can extend assembled contigs to complete or nearly complete genomes while maintaining extension quality.
View Article and Find Full Text PDFPLoS One
January 2025
Natural Energy Research Center Co., Ltd (NERC), Sapporo, Hokkaido, Japan.
We have carried out spectral analysis of coronavirus disease 2019 (COVID-19) notifications in all 47 prefectures in Japan. The results confirm that the power spectral densities (PSDs) of the data from each prefecture show exponential characteristics, which are universally observed in the PSDs of time series generated by nonlinear dynamical systems, such as the susceptible/exposed/infectious/recovered (SEIR) epidemic model. The exponential gradient increases with the population size.
View Article and Find Full Text PDFWe present a comprehensive genetic investigation of Late Neolithic (LN) and Early Copper Age (ECA) populations living in the Carpathian Basin, leveraging whole genome data from 125 previously unreported individuals. Using population genetics, kinship analyses and the study of networks of identity-by-descent haplotype segment sharing, we elucidate the social and genetic dynamics of these communities between 4800-3900 cal BCE. Despite changes in settlement patterns, burial practices, and material culture, we document a high degree of genetic continuity.
View Article and Find Full Text PDFHeliyon
January 2025
Center for Research in Geospatial Data and Intelligence, Department of Geomatics Sciences, Université Laval, 1055, Avenue Du Séminaire, Québec, QC, Canada.
To reach a destination within the community, it is crucial that wheelchair users possess the ability to plan, execute, and acquire knowledge of routes in a safe and efficient manner. While numerous methods have been introduced for assessing the accessibility of sidewalks, existing studies often overlook the variations in the perception of the accessibility of long segments based on each wheelchair user's capabilities. Extended distances may lead to increased fatigue, impacting the ability of individuals with mobility disabilities to navigate sidewalks comfortably and independently.
View Article and Find Full Text PDFEnviron Res
January 2025
Département de Psychologie, Université du Québec à Montréal, C.P. 8888 succursale Centre-ville, Montréal, Québec, H3C 3P8, Canada; Centre de Recherche du CHU Sainte-Justine, 3175, Chemin de La Côte-Sainte-Catherine, Montréal, Québec, H3T 1C5, Canada. Electronic address:
Exposure to lead, mercury, and polychlorinated biphenyls (PCBs) has been causally linked to spatial memory deficits and hippocampal changes in animal models. The Inuit community in Northern Canada is exposed to higher concentrations of these contaminants compared to the general population. This study aimed to 1) investigate associations between prenatal and current contaminant exposures and medial temporal brain volumes in Inuit late adolescents; 2) examine the relationship between these brain structures and spatial memory; and 3) assess the mediating role of brain structures in the association between contaminant exposure and spatial memory.
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