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Development of HepatIA: A computed tomography annotation platform and database for artificial intelligence training in hepatocellular carcinoma detection at a Brazilian tertiary teaching hospital. | LitMetric

AI Article Synopsis

  • - The study addresses the high mortality rates associated with hepatocellular carcinoma (HCC) and discusses the importance of CT scans in diagnosing this condition, highlighting the role of AI in medical imaging, which is limited by a lack of accessible liver imaging datasets.
  • - The researchers developed HepatIA, a specialized medical imaging annotation platform that organizes data from 656 patient CT scans, using technologies like PostgreSQL, Django, and Vue.js, while also employing advanced annotation tools for accurate liver morphology analysis.
  • - The resulting HepatIA database includes data from both healthy individuals and those with liver diseases, with a user-friendly interface that allows for detailed demographic searches, ultimately facilitating deep learning research on liver lesions within the medical community.

Article Abstract

Background: Hepatocellular carcinoma (HCC) is a prevalent tumor with high mortality rates. Computed tomography (CT) is crucial in the non-invasive diagnosis of HCC. Recent advancements in artificial intelligence (AI) have shown significant potential in medical imaging analysis. However, developing these AI algorithms is hindered by the scarcity of comprehensive, publicly available liver imaging datasets.

Objectives: This study aims to detail the tools, data organization, and database structuring used in creating HepatIA, a medical imaging annotation platform and database at a Brazilian tertiary teaching hospital. HepatIA supports liver disease AI research at the institution.

Material And Methods: The authors collected baseline characteristics and CT scans of 656 patients from 2008 to 2021. The database, designed using PostgreSQL and implemented with Django and Vue.js, includes 692 CT volumes from a four-phase abdominal CT protocol. Radiologists made segmentation annotations using the OHIF medical image viewer, incorporating MONAI Label for pre-annotation segmentation models. The annotation process included detailed descriptions of liver morphology and nodule characteristics.

Results: The HepatIA database currently includes healthy individuals and those with liver diseases such as HCC and cirrhosis. The database dashboard facilitates user interaction with intuitive plots and histograms. Key patient demographics include 64% males and an average age of 56.89 years. The database supports various filters for detailed searches, enhancing research capabilities.

Conclusion: A comprehensive data structure was successfully created and integrated with the IT systems of a teaching hospital, enabling research on deep learning algorithms applied to abdominal CT scans for investigating hepatic lesions such as HCC.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11497422PMC
http://dx.doi.org/10.1016/j.clinsp.2024.100512DOI Listing

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