We present 'GAM4water,' a R-based method to classify wetted and non-wetted (dry) areas using remotely sensed image indices derived from such images. The GAM4water classification algorithm is built around a Generalized Additive Model (GAM) capable of accounting for non-linear responses. GAM4water can use any type of radiometric data, whether from drones, satellites or other platforms, and can be used with data of different spatial resolutions, geographic extents and spatial reference systems. It is a supervised tool that uses pixel information to distinguish between wetted and dry areas within an image set, extract them and produce a rich output that includes a binary raster, polygons of wetted areas, and a classification performance report. We tested the method in two case-studies, one using high resolution drone images and another using satellite images. The tests show that GAM4water can produce highly accurate classifications of wetted and non-wetted areas, and has the additional benefit of being easily customizable and not requiring complex implementation procedures.•This paper introduces the first R based method of wetted area extraction for remotely-sensed images.•The method is based on Generalized Additive Models and is applicable to any remotely-sensed data.
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http://dx.doi.org/10.1016/j.mex.2024.102955 | DOI Listing |
Intensive Care Med Exp
January 2025
Department of Life Sciences, Aberystwyth University, Ceredigion, UK.
Purpose: The landiolol and organ failure in patients with septic shock (STRESS-L study) included a pre-planned sub-study to assess the effect of landiolol treatment on inflammatory and metabolomic markers.
Methods: Samples collected from 91 patients randomised to STRESS-L were profiled for immune and metabolomic markers. A panel of pro- and anti-inflammatory cytokines were measured through commercially acquired multiplex Luminex assays and statistically analysed by individual and cluster-level analysis (patient).
BMC Bioinformatics
January 2025
LBAI, UMR1227, Univ Brest, Inserm, Laboratory of Immunology, CHU Brest, Brest, France.
Background: Interpreting biological system changes requires interpreting vast amounts of multi-omics data. While user-friendly tools exist for single-omics analysis, integrating multiple omics still requires bioinformatics expertise, limiting accessibility for the broader scientific community.
Results: BiomiX tackles the bottleneck in high-throughput omics data analysis, enabling efficient and integrated analysis of multiomics data obtained from two cohorts.
Veg Hist Archaeobot
August 2024
School of Archaeology, University of Oxford, Oxford, UK.
Unlabelled: The R package CropPro is an open-access resource to classify archaeobotanical samples as products and by-products of different stages of the crop processing sequence for large-seeded cereal and pulse crops in south west Asia, Europe and other Mediterranean regions. It builds on ethnographic research and analysis conducted by Jones (Plants and ancient man: studies in palaeoethnobotany. Balkema, Rotterdam, pp 43-61, 1984), (J Archaeol Sci 14:311-323, 1987), (Circaea 6:91-96, 1990) and a modified method by Charles (Environ Archaeol 1:111-122, 1998).
View Article and Find Full Text PDFGigascience
January 2025
School of Life, Health & Chemical Sciences, The Open University, Milton Keynes, Buckinghamshire, MK7 6AA, UK.
Background: Bioinformatics is fundamental to biomedical sciences, but its mastery presents a steep learning curve for bench biologists and clinicians. Learning to code while analyzing data is difficult. The curve may be flattened by separating these two aspects and providing intermediate steps for budding bioinformaticians.
View Article and Find Full Text PDFOrthop J Sports Med
January 2025
Department of Orthopaedics, Institute of Clinical Sciences, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Background: The rate of subjective failure after isolated primary posterior cruciate ligament reconstruction (PCL-R) is relatively high, requiring an improved understanding of factors associated with inferior outcomes.
Purpose: To determine the association between patient and injury-related factors and total (surgical and clinical) failure at 2 years after PCL-R based on data from the Swedish National Knee Ligament Registry (SNKLR) and the Norwegian Knee Ligament Registry (NKLR).
Study Design: Cohort study; Level of evidence, 3.
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