One of the main limitations in supporting experimental characterization of Al siting/pairing modelling is the high computational cost of calculations. For this reason, most works rely on static or very short dynamical simulations, considering limited Al pairing/siting combinations. As a result, comparison with experiment suffers from a large degree of uncertainty. To alleviate this limitation we have developed neural network potentials (NNPs) which can dynamically sample across broad configurational and chemical spaces of sodium-form aluminosilicate zeolites, preserving the level of accuracy of the (dispersion-corrected metaGGA) training set. By exploring a wide range of Al/Na arrangements and a combination of experimentally relevant Si/Al ratios, we found that the Na NMR spectra of dehydrated high-silica CHA zeolite offer an opportunity to assess the distribution and pairing of Al atoms. We observed that the Na chemical shift is sensitive not only to the location of sodium in 6- and 8MRs, but also to the Al-Si-Al sequence length. Furthermore, neglect of thermal and dynamical contributions was found to lead to errors of several ppm, and has a profound influence on the shape of the spectra and the dipolar coupling constants, thus necessitating the long-term dynamical simulations made feasible by NNPs. Finally, we obtained a predictive regression model for the Na chemical shift in CHA (Si/Al = 35, 17, 11) that circumvents the need for expensive NMR density functional calculations and can be easily extended to other zeolite frameworks. By combining NNPs and regression methods, we can expedite the simulations of NMR properties and capture the effect of dynamics on the spectra, which is often overlooked in computational studies despite its clear manifestation in experimental setups.
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Inorg Chem
January 2025
State Key Laboratory of Superhard Materials and Key Laboratory of Material Simulation Methods & Software of Ministry of Education, College of Physics, Jilin University, Changchun 130012, China.
Superconducting hydrides exhibiting a high critical temperature () under extreme pressures have garnered significant interest. However, the extremely high pressures required for their stability have limited their practical applications. The current challenge is to identify high- superconducting hydrides that can be stabilized at lower or even ambient pressures.
View Article and Find Full Text PDFFEBS Open Bio
January 2025
Institute of Neurophysiology, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Germany.
Neurotransmitter release is triggered in microseconds by the two C domains of the Ca sensor synaptotagmin-1 and by SNARE complexes, which form four-helix bundles that bridge the vesicle and plasma membranes. The synaptotagmin-1 CB domain binds to the SNARE complex via a 'primary interface', but the mechanism that couples Ca-sensing to membrane fusion is unknown. Widespread models postulate that the synaptotagmin-1 Ca-binding loops accelerate membrane fusion by inducing membrane curvature, perturbing lipid bilayers or helping bridge the membranes, but these models do not seem compatible with SNARE binding through the primary interface, which orients the Ca-binding loops away from the fusion site.
View Article and Find Full Text PDFExp Brain Res
January 2025
Ashton Graybiel Spatial Orientation Laboratory, Brandeis University, MS 033, 415 South Street, Waltham, MA, 02453, USA.
Younger adults (YA) and older adults (OA) used a joystick to stabilize an unstable visual inverted pendulum (VIP) with a fundamental frequency (.27 Hz) of half that of bipedal human sway. Their task was to keep the VIP upright and to avoid ± 60° "fall" boundaries.
View Article and Find Full Text PDFSci Rep
January 2025
Department of Orthopaedic, South China Hospital of Shenzhen University, Shenzhen, 518116, Guangdong, China.
Before patients begin out-of-bed exercises following internal fixation surgery for acetabular fractures, turning over in bed serves as a crucial intervention to mitigate complications associated with prolonged bed rest. However, data on the safety of this maneuver post-surgery are limited, and the biomechanical evidence remains unclear. This study aims to introduce a novel loading protocol designed to preliminarily simulate the action of turning over in bed and to compare the biomechanical properties of two fixation methods for acetabular fractures under this new protocol.
View Article and Find Full Text PDFNat Chem Biol
January 2025
Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Voltage-gated ion channels (VGICs) are crucial targets for neuropsychiatric therapeutics owing to their role in controlling neuronal excitability and the established link between their dysfunction and neurological diseases, highlighting the importance of identifying modulators with distinct mechanisms. Here we report two small-molecule modulators with the same chemical scaffold, Ebio2 and Ebio3, targeting a potassium channel KCNQ2, with opposite effects: Ebio2 acts as a potent activator, whereas Ebio3 serves as a potent and selective inhibitor. Guided by cryogenic electron microscopy, patch-clamp recordings and molecular dynamics simulations, we reveal that Ebio3 attaches to the outside of the inner gate, employing a unique non-blocking inhibitory mechanism that directly squeezes the S6 pore helix to inactivate the KCNQ2 channel.
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