Development and validation of a clinic-radiomics model based on intratumoral habitat imaging for progression-free survival prediction of patients with clear cell renal cell carcinoma: A multicenter study.

Urol Oncol

Engineering Research Center of Health Emergency, From the Medical Imaging College, Nanjing Medical University, Nanjing, China; Department of Radiology, The First Affiliated Hospital with Nanjing Medical University, Nanjing, China. Electronic address:

Published: January 2025

AI Article Synopsis

  • The study aimed to create and validate a model using intratumoral habitat imaging to predict progression-free survival (PFS) in patients with clear cell renal cell carcinoma (ccRCC) and to examine gene expression linked to progression.
  • It involved analyzing data from 691 ccRCC patients, using various Cox regression models to compare traditional radiomics features with those derived from habitat subregions, yielding a stronger predictive model when combining both types (Hybrid Cox).
  • The Hybrid Cox model showed better predictive performance in terms of PFS, with significant survival differences observed among patient risk groups, and identified crucial genes associated with tumor characteristics that may influence metabolism and immune response.

Article Abstract

Purpose: To develop and validate a clinicoradiomics model based on intratumoral habitat imaging for preoperatively predicting of progression-free survival (PFS) of clear cell renal cell carcinoma (ccRCC) and analyzing progression-associated genes expression.

Methods: This retrospective study included 691 ccRCC patients from multicenter databases. Entire tumor segmentation was performed with handcrafted process to generate habitat subregions based on a pixel-wise gray-level co-occurrence matrix analysis. Cox regression models for PFS prediction were constructed using conventional volumetric radiomics features (Radiomics), habitat subregions-derived radiomics (Rad-Habitat), and an integration of habitat radiomics and clinical characteristics (Hybrid Cox). Training (n = 393) and internal validation (n = 118) was performed in a Nanjing cohort, external validation was performed in a Wuhan and Zhejiang cohort (n = 227) and in a TCGA-KIRC (n =71) with imaging-genomic correlation. Statistical analysis included the area-under-ROC curve analysis, C-index, decision curve analysis (DCA) and Kaplan-Meier survival analysis.

Results: Hybrid Cox model resulted in a C-index of 0.83 (95% CI, 0.73-0.93) in internal validation and 0.79 (95% CI, 0.74-0.84) in external validation for PFS prediction, higher than Radiomics and Rad-Habitat model. Patients stratified by Hybrid Cox model presented with significant difference survivals between high-risk and low-risk group in 3 data sets (all P < 0.001 at Log-rank test). TCGA-KIRC data analysis revealed 37 upregulated and 81 downregulated genes associated with habitat imaging features of ccRCC. Differentially expressed genes likely play critical roles in protein and mineral metabolism, immune defense, and cellular polarity maintenance.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.urolonc.2024.09.025DOI Listing

Publication Analysis

Top Keywords

habitat imaging
12
hybrid cox
12
model based
8
based intratumoral
8
intratumoral habitat
8
progression-free survival
8
clear cell
8
cell renal
8
renal cell
8
cell carcinoma
8

Similar Publications

Data-driven models of neurons and circuits are important for understanding how the properties of membrane conductances, synapses, dendrites, and the anatomical connectivity between neurons generate the complex dynamical behaviors of brain circuits in health and disease. However, the inherent complexity of these biological processes makes the construction and reuse of biologically detailed models challenging. A wide range of tools have been developed to aid their construction and simulation, but differences in design and internal representation act as technical barriers to those who wish to use data-driven models in their research workflows.

View Article and Find Full Text PDF

The wind-blown sand protection system in the Shapotou section of the Baotou-Lanzhou Railway is a representative artificial ecosystem in a desert region. Over the past 70 years, this system has transformed mobile dunes into fixed dunes through vegetation succession, relying solely on natural rainfall without additional irrigation. However, ecosystem sustainability has been endangered by the emergence of numerous blowouts.

View Article and Find Full Text PDF

Indigenous university students' perceptions regarding nature, their daily lives and climate change: a photovoice study.

BMC Public Health

January 2025

Department of Population Health Sciences, School of Life Course & Population Sciences, King's College London, Franklin-Wilkins Building, Stamford Street London, SE1 9NH, UK.

Background: Climate change has severe health impacts, particularly for populations living in environmentally sensitive areas such as riversides, slopes, and forests. These challenges are exacerbated for Indigenous communities, who often face marginalisation and rely heavily on the land for their livelihoods. Despite their vulnerability, the perspectives of Indigenous populations on climate change and its impacts remain underexplored, creating a critical gap in the literature.

View Article and Find Full Text PDF

Assessment of temporal aggregation of Sentinel-2 images on seasonal land cover mapping and its impact on landscape metrics.

Environ Monit Assess

January 2025

Universidad Nacional de Córdoba - Facultad de Ciencias Agropecuarias, X5000HUA, Córdoba, Argentina.

Landscape metrics (LM) play a crucial role in fields such as urban planning, ecology, and environmental research, providing insights into the ecological and functional dynamics of ecosystems. However, in dynamic systems, generating thematic maps for LM analysis poses challenges due to the substantial data volume required and issues such as cloud cover interruptions. The aim of this study was to compare the accuracy of land cover maps produced by three temporal aggregation methods: median reflectance, maximum normalised difference vegetation index (NDVI), and a two-date image stack using Sentinel-2 (S2) and then to analyse their implications for LM calculation.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates how well a gut bacteria strain, Bacillus cereus AP-01, can break down low-density polyethylene (LDPE), using experiments over 28 days to measure its effectiveness.
  • The researchers employed various methods like FTIR and SEM to analyze changes in LDPE structure and confirmed the bacterial strain through molecular characterization.
  • Results showed that the bacteria significantly degraded LDPE, with a 30.3% weight loss and changes in mechanical properties, highlighting its potential as a solution for plastic pollution.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!