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Identification of novel hub genes and immune infiltration in atopic dermatitis using integrated bioinformatics analysis. | LitMetric

AI Article Synopsis

  • The study focused on identifying key genes and understanding the immune mechanisms involved in atopic dermatitis (AD) using bioinformatics.
  • Researchers analyzed gene expression data to find common differentially expressed genes (co-DEGs) and conducted functional enrichment and network analysis to identify hub genes.
  • The findings showed a connection between specific hub genes and immune cell infiltration, suggesting these genes could be important for diagnosing and treating AD.

Article Abstract

The aim of this study was to identify key genes and investigate the immunological mechanisms of atopic dermatitis (AD) at the molecular level via bioinformatics analysis. Gene expression profiles (GSE32924, GSE107361, GSE121212, and GSE230200) were obtained for screening common differentially expressed genes (co-DEGs) from the gene expression omnibus database. Functional enrichment analysis, protein-protein interaction network and module construction, and identification of common hub genes were performed. Hub genes were validated using receiver operating characteristic curve analysis based on GSE130588 and GSE16161. NetworkAnalyst was used to detect microRNAs (miRNAs) and transcription factors (TFs) associated with the hub genes. The immune cell infiltration was analyzed using the CIBERSORT algorithm to further analyze the correlation between hub genes and immune cells. A total of 146 co-DEGs were obtained, showing significant enrichment in cytokine-cytokine receptor interaction and JAK-STAT signaling pathway. Seven hub genes were identified by Cytoscape and validated with external datasets. Subsequent prediction of miRNAs and TFs targeting these hub genes revealed their regulatory roles. Analysis of immune cell infiltration and correlation revealed a significant positive correlation between CCL22 expression and the number of dendritic cells activated. The identified hub genes represent potential diagnostic and therapeutic targets in the immunological pathogenesis of AD.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11452488PMC
http://dx.doi.org/10.1038/s41598-024-73244-8DOI Listing

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