AI Article Synopsis

  • Faith's Phylogenetic Diversity (PD) showcases a strong exchange property that facilitates moving leaves between sets without decreasing diversity, leading to an efficient greedy solution for optimizing PD on rooted trees.
  • The study introduces an exchange property specifically for rooted Phylogenetic Subnet Diversity (rPSD) on phylogenetic networks, which requires a more intricate approach to exchanging leaves.
  • Utilizing this new exchange property, the researchers develop a polynomial-time greedy solution for optimizing rPSD in rooted semibinary level-2 phylogenetic networks.

Article Abstract

Faith's Phylogenetic Diversity (PD) on rooted phylogenetic trees satisfies the so-called strong exchange property that guarantees that, for every two sets of leaves of different cardinalities, a leaf can always be moved from the larger set to the smaller set in such a way that the sum of the PD values does not decrease. This strong exchange property entails a simple polynomial-time greedy solution to the PD optimization problem on rooted phylogenetic trees. In this paper we obtain an exchange property for the rooted Phylogenetic Subnet Diversity (rPSD) on rooted phylogenetic networks, which involves a more complicated exchange of leaves. We derive from it a polynomial-time greedy solution to the rPSD optimization problem on rooted semibinary level-2 phylogenetic networks.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11452452PMC
http://dx.doi.org/10.1007/s00285-024-02142-4DOI Listing

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