Identification of quantitative trait loci and candidate genes for pod shatter resistance in Brassica carinata.

BMC Plant Biol

NSW Department of Primary Industries and Regional Development, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW, 2650, Australia.

Published: September 2024

AI Article Synopsis

  • This study investigates the genetic control of pod shatter resistance and its relationship with pod length in Brassica carinata species, focusing on a mapping population created from two Ethiopian parent lines over three years.
  • Researchers identified nine genomic regions associated with pod shatter resistance, notably a significant QTL on chromosome B07 that explained a large portion of genetic variance in rupture energy.
  • The findings indicate that while pod length does not affect pod shatter resistance, favorable genetic traits can be utilized to enhance seed yield in shatter-prone Brassica cultivars.

Article Abstract

Background: Understanding the genetic control of pod shatter resistance and its association with pod length is crucial for breeding improved pod shatter resistance and reducing pre-harvest yield losses due to extensive shattering in cultivars of Brassica species. In this study, we evaluated a doubled haploid (DH) mapping population derived from an F cross between two Brassica carinata parental lines Y-BcDH64 and W-BcDH76 (YWDH), originating from Ethiopia and determined genetic bases of variation in pod length and pod shatter resistance, measured as rupture energy. The YWDH population, its parental lines and 11 controls were grown across three years for genetic analysis.

Results: By using three quantitative trait loci (QTL) analytic approaches, we identified nine genomic regions on B02, B03, B04, B06, B07 and C01 chromosomes for rupture energy that were repeatedly detected across three growing environments. One of the QTL on chromosome B07, flanked with DArTseq markers 100,046,735 and 100,022,658, accounted for up to 27.6% of genetic variance in rupture energy. We observed no relationship between pod length and rupture energy, suggesting that pod length does not contribute to variation in pod shatter resistance. Comparative mapping identified six candidate genes; SHP1 on B6, FUL and MAN on chromosomes B07, IND and NST2 on B08, and MAN7 on C07 that mapped within 0.2 Mb from the QTL for rupture energy.

Conclusion: The results suggest that favourable alleles of stable QTL on B06, B07, B08 and C01 for pod shatter resistance can be incorporated into the shatter-prone B. carinata and its related species to improve final seed yield at harvest.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11441008PMC
http://dx.doi.org/10.1186/s12870-024-05596-2DOI Listing

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