AI Article Synopsis

  • Six PCGF proteins (PCGF1-6) characterize different subcomplexes of the Polycomb repressor complex 1 (PRC1), each playing unique roles in epigenetic regulation.
  • Research using affinity purification mass spectrometry (AP-MS) on PCGF1, PCGF2, and PCGF4 in NT2 cells identified a variety of interacting proteins involved in crucial pathways for cell biology and chromatin regulation.
  • Findings indicated a mutual regulatory relationship among the PCGF subunits, with disruption leading to decreased cell proliferation, highlighting the importance of PCGF compositional diversity in cellular functions.

Article Abstract

The six PCGF proteins (PCGF1-6) define the biochemical identity of Polycomb repressor complex 1 (PRC1) subcomplexes. While structural and functional studies of PRC1 subcomplexes have revealed their specialized roles in distinct aspects of epigenetic regulation, our understanding of the variation in the protein interaction networks of distinct PCGF subunits in different PRC1 complexes is incomplete. We carried out an affinity purification mass spectrometry (AP-MS) screening of three PCGF subunits, PCGF1 (NSPC1), PCGF2 (MEL18), and PCGF4 (BMI1), to define their interactome and potential cellular function in pluripotent human embryonal carcinoma cell "NT2". The bioinformatic analysis revealed that these interacting proteins cover a range of functional pathways, often involved in cell biology and chromatin regulation. We also found evidence of mutual regulation (at mRNA and protein level) between three distinct PCGF subunits. Furthermore, we confirmed that the disruption of these subunits results in reduced cell proliferation ability. We reveal an interplay between the compositional diversity of the distinct PCGF containing PRC1 complex and the potential role of PCGF proteins within the wider cellular network.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11432245PMC
http://dx.doi.org/10.3390/ijms25189809DOI Listing

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Article Synopsis
  • Six PCGF proteins (PCGF1-6) characterize different subcomplexes of the Polycomb repressor complex 1 (PRC1), each playing unique roles in epigenetic regulation.
  • Research using affinity purification mass spectrometry (AP-MS) on PCGF1, PCGF2, and PCGF4 in NT2 cells identified a variety of interacting proteins involved in crucial pathways for cell biology and chromatin regulation.
  • Findings indicated a mutual regulatory relationship among the PCGF subunits, with disruption leading to decreased cell proliferation, highlighting the importance of PCGF compositional diversity in cellular functions.
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Polycomb group proteins assemble into multi-protein complexes, known as Polycomb repressive complexes 1 and 2 (PRC1 and PRC2), that guide cell fate decisions during embryonic development. PRC1 forms an array of biochemically distinct canonical PRC1 (cPRC1) or non-canonical PRC1 (ncPRC1) complexes characterized by the mutually exclusive presence of PCGF (PCGF1-PCGF6) paralog subunit; however, whether each one of these subcomplexes fulfills a distinct role remains largely controversial. Here, by performing a CRISPR-based loss-of-function screen in embryonic stem cells (ESCs), we uncovered a previously unappreciated functional redundancy among PRC1 subcomplexes.

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Article Synopsis
  • PRC1 and PRC2 are protein complexes that help regulate gene expression and maintain cell identity by creating repressive domains on genes.
  • PRC1 can form different subcomplexes based on the PCGF proteins it contains, though the specific roles of these subcomplexes were previously unclear.
  • The study finds that while PCGF1 and PCGF2 can compensate for one another, other PCGF proteins, like PCGF3 and PCGF6, specialize in targeting distinct genes and can function independently of PRC1's usual activity for chromatin recruitment.
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The Polycomb system modifies chromatin and plays an essential role in repressing gene expression to control normal mammalian development. However, the components and mechanisms that define how Polycomb protein complexes achieve this remain enigmatic. Here, we use combinatorial genetic perturbation coupled with quantitative genomics to discover the central determinants of Polycomb-mediated gene repression in mouse embryonic stem cells.

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