Litter size is an important trait in pig production. But selection accuracy for this trait is relatively low, compared with production traits. This study, for the first time, investigated the improvement of genetic evaluation of reproduction traits such as litter size in pigs using data of production traits as an additional information source. The data of number of piglets born alive per litter (NBA), age at 100 kg of body weight (Age100), and lean meet percentage (LMP) in a Yorkshire population were analyzed, using either a single-trait model or the multitrait model that allows us to account for environmental correlation between reproduction and production traits in the situation that one individual has only one record for a production trait while multiple records for a reproduction trait. Accuracy of genetic evaluation using single-trait and multitrait models were assessed by model-based accuracy (R) and validation accuracy (R). Two validation scenarios were considered. One scenario (Valid_r1) was that the individuals did not have a record of NBA, but Age100 and LMP. The other (Valid_r2) was that the individuals did not have a record for all the three traits. The estimate of heritability was 0.279 for Age100, 0.371 for LMP, and 0.076 for NBA. Genetic correlation was 0.308 between Age100 and LMP, 0.369 between Age100 and NBA, and 0.022 between LMP and NBA. Compared with the single-trait model, the multitrait model including Age100 increased prediction accuracy for NBA by 3.6 percentage points in R and 5.9 percentage points in R for the scenario of Valid_r1. The increase was 1.8 percentage points in R and 3.8 percentage points in R for the scenario of Valid_r2. Age100 also gained in the multitrait model but was smaller than NBA. However, LMP did not benefit from a multitrait model and did not have a positive contribution to genetic evaluation for NBA. In addition, the multitrait model, in general, slightly reduced level bias but not dispersion bias of genetic evaluation. According to these results, it is recommended to predict breeding values using a multitrait model including growth and reproduction traits.
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http://dx.doi.org/10.3390/ani14182669 | DOI Listing |
Theor Appl Genet
January 2025
Grasslands Research Centre, AgResearch Ltd, Private Bag 11008, Palmerston North, 4442, New Zealand.
Genomic selection using white clover multi-year-multi-site data showed predicted genetic gains through integrating among-half-sibling-family phenotypic selection and within-family genomic selection were up to 89% greater than half-sibling-family phenotypic selection alone. Genomic selection, an effective breeding tool used widely in plants and animals for improving low-heritability traits, has only recently been applied to forages. We explored the feasibility of implementing genomic selection in white clover (Trifolium repens L.
View Article and Find Full Text PDFG3 (Bethesda)
January 2025
Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA.
In recent years, black beans (Phaseolus vulgaris L.) have gained popularity in the U.S.
View Article and Find Full Text PDF1. The heritability (h) of liveweight (LW) in ostriches can be highly variable, depending on age at recording. The objective of this study was to consider random regression (RR) as an alternative to the multi-trait (MT) structure for the analysis of repeated measures of LW.
View Article and Find Full Text PDFAnimal
December 2024
National Research Institute of Animal Production, ul. Krakowska 1, 32-083 Balice, Poland.
Precise genetic parameter estimates can allow the breeding value evaluation to be adjusted to meet European requirements and to enable participation in the international evaluation of Simmental bulls conducted by Interbull. Genetic parameters were estimated for a multitrait multilactation random regression test-day model for milk in Simmental cattle in Poland. Data came from the official Polish national recording system.
View Article and Find Full Text PDFBioinform Adv
December 2024
Center for Agricultural Data Analytics, University of Arkansas, Fayetteville, AR 72701, United States.
Motivation: The scale and scope of comparative trait data are expanding at unprecedented rates, and recent advances in evolutionary modeling and simulation sometimes struggle to match this pace. Well-organized and flexible applications for conducting large-scale simulations of evolution hold promise in this context for understanding models and more so our ability to confidently estimate them with real trait data sampled from nature.
Results: We introduce , an R package designed to facilitate efficient, large-scale simulations under complex models of continuous trait evolution.
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