Radical (R) and R-hole site-based interactions are comparatively studied, for the first time, using methods. In this regard, R-bearing molecules XO (where X = Cl, Br, and I) were subjected to direct interaction with NH within dimeric and trimeric forms in the form of NH···XO/XO···NH and NH···XO···NH complexes, respectively. As confirmed by electrostatic potential analysis, the studied R-bearing molecules XO had the outstanding potentiality to interact as Lewis acid centers via two positive sites dubbed as R and R-hole sites. Such an observation proposed the potentiality of the considered XO molecules to engage in unconventional R and well-established R-hole site-based interactions with Lewis bases. This was confirmed by negative interaction ( ) energies, ranging from -4.93 to -19.89 kcal/mol, with higher favorability for R site-based interactions over the R-hole site-based ones. MP2 energetic features furnished higher preferability for the R site-based interactions than the R-hole site-based ones in the case of chlorine- and bromine-bearing complexes, and the reverse was true for the iodine-bearing complexes. Moreover, elevated values were recorded for the NH···XO···NH trimers over the NH···XO and XO···NH dimers, outlining the higher preference of the XO molecules to engage in R and R-hole site-based interactions in the trimeric form over the dimeric one. These results might be considered a requisite linchpin for numerous forthcoming supramolecular chemistry and crystal engineering studies.
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http://dx.doi.org/10.1021/acsomega.4c04620 | DOI Listing |
Inorg Chem
December 2024
School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, China.
Water pollution resulting from Hg(II) ions has garnered significant global concern for public health. The flexibility and simplicity of design, cost savings, and ease of operation with adaptive designs provide adsorption with a considerable advantage over other processes. However, MoS is hydrophobic in nature, which limits its efficiency in the removal of Hg(II) ions from water.
View Article and Find Full Text PDFMethods Mol Biol
November 2024
Faculty of Chemistry, University of Gdańsk, Fahrenheit Union of Universities in Gdańsk, Gdańsk, Poland.
Coarse graining is usually considered as a tool to extend the time and size scale of simulations. However, leaving out the atomistic details to keep their fingerprints in a coarse-grained model also enables us to understand better structure formation and dynamics. In this chapter, by using our scale-consistent theory of coarse graining, we demonstrate that the coarse-grained terms corresponding to the coupling between local conformational states of amino-acid residues explain secondary-structure propagation along polypeptide backbone to stabilize -helices and -strands in proteins and direct the loops preceding and following such segments of protein structure.
View Article and Find Full Text PDFAnal Chem
October 2024
School of Pharmacy, Health Science Center, Xi'an Jiaotong University, Xi'an 710061, China.
ACS Omega
September 2024
Department of Chemistry, The American University in Cairo, New Cairo 11835, Egypt.
Radical (R) and R-hole site-based interactions are comparatively studied, for the first time, using methods. In this regard, R-bearing molecules XO (where X = Cl, Br, and I) were subjected to direct interaction with NH within dimeric and trimeric forms in the form of NH···XO/XO···NH and NH···XO···NH complexes, respectively. As confirmed by electrostatic potential analysis, the studied R-bearing molecules XO had the outstanding potentiality to interact as Lewis acid centers via two positive sites dubbed as R and R-hole sites.
View Article and Find Full Text PDFPLoS One
September 2024
Departamento de Zoología, Instituto de Biología, Pabellón Nacional de la Biodiversidad, Universidad Nacional Autónoma de México, Ciudad de México, Mexico City, México.
Species interactions between bats and fungi are poorly known. We documented the association between fungal and bat diversities along a landscape gradient. Ten, eight, and seven bat species were captured in conserved, semi-conserved, and urban sites, respectively.
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