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A Perspective on Neuroscience Data Standardization with Neurodata Without Borders. | LitMetric

A Perspective on Neuroscience Data Standardization with Neurodata Without Borders.

J Neurosci

Department of Neuroscience, Division of Biology and Medicine, Brown University, Providence, Rhode Island 02912

Published: September 2024

AI Article Synopsis

  • - Neuroscience research is generating larger and more complex data sets, prompting the adoption of advanced data science tools, with Neurodata Without Borders (NWB) offering a standardized approach for managing and sharing neurophysiology data
  • - The article discusses the implementation of NWB data science pipelines in the authors' labs, highlighting successes, challenges, and design decisions to aid in bridging experimental neuroscience and data science
  • - Key insights include the importance of standardization in enhancing data awareness and transparency, as well as specific feature suggestions to improve the usability and sharing of NWB data among researchers

Article Abstract

Neuroscience research has evolved to generate increasingly large and complex experimental data sets, and advanced data science tools are taking on central roles in neuroscience research. Neurodata Without Borders (NWB), a standard language for neurophysiology data, has recently emerged as a powerful solution for data management, analysis, and sharing. We here discuss our labs' efforts to implement NWB data science pipelines. We describe general principles and specific use cases that illustrate successes, challenges, and non-trivial decisions in software engineering. We hope that our experience can provide guidance for the neuroscience community and help bridge the gap between experimental neuroscience and data science. Key takeaways from this article are that (1) standardization with NWB requires non-trivial design choices; (2) the general practice of standardization in the lab promotes data awareness and literacy, and improves transparency, rigor, and reproducibility in our science; (3) we offer several feature suggestions to ease the extensibility, publishing/sharing, and usability for NWB standard and users of NWB data.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11411583PMC
http://dx.doi.org/10.1523/JNEUROSCI.0381-24.2024DOI Listing

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