The performance of a machine learning (ML) algorithm for chemistry is highly contingent upon the architect's choice of input representation. This work introduces the partial density of states (p-DOS) descriptor: a novel, quantum-inspired structural representation which encodes relevant electronic information for machine learning models seeking to simulate X-ray spectroscopy. p-DOS uses a minimal basis set in conjunction with a guess (non-optimised) electronic configuration to extract and then discretise the density of states (DOS) of the absorbing atom to form the input vector. We demonstrate that while the electronically-focused p-DOS performs well in isolation, optimal performance is achieved when supplemented with nuclear structural information imparted a geometric representation. p-DOS provides a description of the key electronic properties of a system which is not only concise and computationally efficient, but also independent of molecular size or choice of basis set. It can be rapidly generated, facilitating its application with large training sets. Its performance is demonstrated using a wide variety of examples at the sulphur K-edge, including the prediction of ultrafast X-ray spectroscopic signal associated with photoexcited 2(5)-thiophenone. These results highlight the potential for ML models developed using p-DOS to contribute to the interpretation and prediction of experimental results measurements of batteries and/or catalysts and femtosecond time-resolved studies, especially those made possible by emergent cutting-edge technologies, especially X-ray free electron lasers.
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http://dx.doi.org/10.1039/d4cp01368a | DOI Listing |
J Chem Phys
January 2025
Department of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada.
In this work, we propose a path integral Monte Carlo approach based on discretized continuous degrees of freedom and rejection-free Gibbs sampling. The ground state properties of a chain of planar rotors with dipole-dipole interactions are used to illustrate the approach. Energetic and structural properties are computed and compared to exact diagonalization and numerical matrix multiplication for N ≤ 3 to assess the systematic Trotter factorization error convergence.
View Article and Find Full Text PDFOrg Lett
January 2025
School of Chemistry, Engineering Research Center of Energy Storage Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China.
Herein, seven air-stable triarylmethyl radicals (-), each featuring a pyrrole ring, were successfully synthesized. A comprehensive investigation into the linkages at the α-, β-, and -positions of the pyrrole ring, along with various substituents, revealed that the p-π conjugation between the central radical carbon and the pyrrole ring plays a crucial role in the distribution of spin density and overall stability. Notably, radicals to displayed excellent electrochemical and photostability.
View Article and Find Full Text PDFAm J Physiol Gastrointest Liver Physiol
January 2025
Wake Forest Institute for Regenerative Medicine, Wake Forest Baptist Medical Center, Winston-Salem, North Carolina, USA.
This study aimed to determine if local injection of CXCL12 reduces sphincter fibrosis, restores sphincter muscle content, vascularization, and innervation, and recruits progenitor cells in a rabbit model of anal sphincter injury and incontinence. Adult female rabbits were assigned to 3 groups: uninjured/no treatment (control), injured/treated (treated), and injured/no treatment (untreated) (n=4 each). Injured groups were anesthetized and a section of external anal sphincter was removed at the 9:00 o'clock position.
View Article and Find Full Text PDFPhys Chem Chem Phys
January 2025
The Institute for Solid State Physics, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8581, Japan.
Formic acid (HCOOH) is one of the essential molecules for CO utilization including methanol synthesis and hydrogen carriers. In this study, we have investigated the chemical processes of hydrogen and HCOOH on a dilute-alloy Pd-Cu(111) surface using high-resolution X-ray photoelectron spectroscopy (HR-XPS) and density functional theory (DFT) calculations. The present Pd-Cu(111) surface was prepared at 500 K, and the observed core-level shifts of Pd 3d indicate that Pd atoms were located at the surface and subsurface sites: 335.
View Article and Find Full Text PDFACS Nano
January 2025
Department of Chemical and Biological Engineering, Colorado School of Mines, Golden, Colorado 80401, United States.
Colloids can be used either as model systems for directed assembly or as the necessary building blocks for making functional materials. Previous work primarily focused on assembling colloids under a single external field, where controlling particle-particle interactions is limited. This work presents results under a combination of electric and magnetic fields.
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