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Biosynthesis of the benzylpyrrolidine precursor in anisomycin by a unique ThDP-dependent enzyme. | LitMetric

Biosynthesis of the benzylpyrrolidine precursor in anisomycin by a unique ThDP-dependent enzyme.

Synth Syst Biotechnol

State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, 200030, China.

Published: August 2024

AI Article Synopsis

  • Anisomycin is a pyrrolidine antibiotic that primarily works by blocking protein synthesis in cells by binding to the ribosome, specifically obstructing the A-site where amino acids attach.
  • The research reveals that a component named siAniP plays a critical role in the biosynthesis of Anisomycin, facilitating the condensation of specific compounds to start the production of pyrrolidine.
  • The study identifies key amino acids necessary for siAniP's function and suggests its potential as a biocatalyst for creating new compounds with medicinal properties, expanding the understanding of transketolases involved in these biosynthetic processes.

Article Abstract

Anisomycin (compound ), a multifunctional pyrrolidine antibiotic, primarily inhibits protein biosynthesis by binding to the ribosome. Upon binding to the ribosome, the para-phenol moiety of anisomycin inserts completely into the hydrophobic crevice of the A-site and blocks the access of the incoming aminoacyl-tRNAs, disrupting peptide bond formation. Hence, the para-methoxyphenyl group serves as a starting point for developing novel anisomycin analogs with potent antifungal and insecticidal properties. However, the activation and condensation mechanism of phenylpyruvic acid has not yet been elucidated. In this study, genetic manipulations of and its homologue confirmed their indispensable role in biosynthesis. Bioinformatics analysis suggested that AniP and siAniP function as transketolase. siAniP was found to catalyzed condensation between 4-hydroxyphenylpyruvic acid () and glyceraldehyde (GA), initiating pyrrolidine synthesis. siAniP was specific for aromatic keto acids and tolerant of aliphatic and aromatic aldehydes, and was able to catalyze the asymmetric intermolecular condensation of two keto acids, leading to the formation of 24 α-hydroxy ketone. To the best of our knowledge, siAniP is the first TK that catalyzes the transfer of a C2 ketol and symmetrical intermolecular coupling using aromatic keto acids as donor substrates. Structural analysis, docking model construction, and site-directed mutagenesis identified that I220, H275, R322 and W391 were crucial for substrate binding. Moreover, sequence similarity network (SSN)-based genome neighborhood network (GNN) analyses of AniP suggested the widespread occurrence of the AniP-like-mediated reaction in the biosynthesis of and its analogs, particularly in the assembly of benzylpyrrolidine. These findings not only expand the repertoire of TKs but also provide a potent biocatalyst that could be used for the structural innovation of and its derivatives.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11387542PMC
http://dx.doi.org/10.1016/j.synbio.2024.08.006DOI Listing

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