Bipartite spectral graph partitioning (BSGP) method as a co-clustering method, has been widely used in document clustering, which simultaneously clusters documents and words by making full use of the duality between documents and words. It consists of two steps: 1) graph construction and 2) singular value decomposition on the bipartite graph to compute a continuous cluster assignment matrix, followed by post-processing to get the discrete solution. However, the generated graph is unstructured and fixed. It heavily relies on the quality of the graph construction. Moreover, the two-stage process may deviate from directly solving the primal problem. In order to tackle these defects, a novel bipartite graph partitioning method is proposed to learn a bipartite graph with exactly c connected components (c is the number of clusters), which can obtain clustering results directly. Furthermore, it is experimentally and theoretically proved that the solution of the proposed model is the discrete solution of the primal BSGP problem for a special situation. Experimental results on synthetic and real-world datasets exhibit the superiority of the proposed method.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1109/TCYB.2024.3451292 | DOI Listing |
J Chem Theory Comput
January 2025
Beijing National Laboratory for Molecular Sciences, State Key Laboratory of Polymer Physics and Chemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, P. R. China.
The accuracy and efficiency of a coarse-grained (CG) force field are pivotal for high-precision molecular simulations of large systems with complex molecules. We present an automated mapping and optimization framework for molecular simulation (AMOFMS), which is designed to streamline and improve the force field optimization process. It features a neural-network-based mapping function, DSGPM-TP (deep supervised graph partitioning model with type prediction).
View Article and Find Full Text PDFPLoS One
January 2025
Computer Science and Engineering Discipline, Khulna University, Khulna, Bangladesh.
The objective of the max-cut problem is to cut any graph in such a way that the total weight of the edges that are cut off is maximum in both subsets of vertices that are divided due to the cut of the edges. Although it is an elementary graph partitioning problem, it is one of the most challenging combinatorial optimization-based problems, and tons of application areas make this problem highly admissible. Due to its admissibility, the problem is solved using the Harris Hawk Optimization algorithm (HHO).
View Article and Find Full Text PDFGenes (Basel)
November 2024
Department of Orthopedic Surgery, The Second Affiliated Hospital of Harbin Medical University, Harbin 150081, China.
Background: The enhancer-promoter interaction (EPI) is a critical component of gene regulatory networks, playing a significant role in understanding the complexity of gene expression. Traditional EPI prediction methods focus on one-to-one interactions, neglecting more complex one-to-many and many-to-many patterns. To address this gap, we utilize graph neural networks to comprehensively explore all interaction patterns between enhancers and promoters, capturing complex regulatory relationships for more accurate predictions.
View Article and Find Full Text PDFSci Rep
January 2025
Department of Mathematics, Faculty of Science, Somali National University, Mogadishu, Somalia.
In this article, we present the concept of extended Seidel energy by employing a generalized extended matrix to study various molecular properties, including the Kovats retention index, boiling point, enthalpy of formation, entropy, acentric factor, and octanol-water partition coefficient. Our research broadens the scope of energy matrices in graph theory, with a particular emphasis on Sombor energy, reduced Sombor energy, average Sombor energy, Banhatti Sombor energy and reduced Banhatti Sombor energy. We examined the correlation of these graph-based energy descriptors with the thermodynamic properties of Benzenoid hydrocarbons (BHC), uncovering strong relationships between these indices and different molecular attributes.
View Article and Find Full Text PDFNetw Neurosci
December 2024
Department of Applied Mathematics and Computer Science, Technical University of Denmark, Lyngby, Denmark.
Understanding the differences between functional and structural human brain connectivity has been a focus of an extensive amount of neuroscience research. We employ a novel approach using the multinomial stochastic block model (MSBM) to explicitly extract components that characterize prominent differences across graphs. We analyze structural and functional connectomes derived from high-resolution diffusion-weighted MRI and fMRI scans of 250 Human Connectome Project subjects, analyzed at group connectivity level across 50 subjects.
View Article and Find Full Text PDFEnter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!