Bacterial β-carbonic anhydrases.

Enzymes

Dipartimento di Chimica "Ugo Schiff", Università di Firenze, Sesto Fiorentino, Firenze, Italia. Electronic address:

Published: September 2024

AI Article Synopsis

  • β-Carbonic anhydrases (β-CAs) are zinc metalloenzymes that convert carbon dioxide into bicarbonate and are found in various bacteria, playing crucial roles in their growth and survival.
  • β-CAs are classified into two subgroups based on their zinc ion's fourth ligand; class I has a hydroxide ion, while class II features an Asp residue, leading to an inactive form below pH 8.
  • A specific Asp-Arg dyad regulates the catalytic activity by controlling the active site's opening and closing, and there are additional sites that bind bicarbonate, contributing to the enzyme's functionality.

Article Abstract

β-Carbonic anhydrases (β-CA; EC 4.2.1.1) are widespread zinc metalloenzymes which catalyze the interconversion of carbon dioxide and bicarbonate. They have been isolated in many pathogenic and non-pathogenic bacteria where they are involved in multiple roles, often related to their growth and survival. β-CAs are structurally distant from the CAs of other classes. In the active site, located at the interface of a fundamental dimer, the zinc ion is coordinated to two cysteines and one histidine. β-CAs have been divided in two subgroups depending on the nature of the fourth ligand on the zinc ion: class I have a zinc open configuration with a hydroxide ion completing the metal coordination, which is the catalytically active species in the mechanism proposed for the β-CAs similar to the well-known of α-CAs, while in class II an Asp residue substitute the hydroxide. This latter active site configuration has been showed to be typical of an inactive form at pH below 8. An Asp-Arg dyad is thought to play a key role in the pH-induced catalytic switch regulating the opening and closing of the active site in class II β-CAs, by displacing the zinc-bound solvent molecule. An allosteric site well-suited for bicarbonate stabilizes the inactive form. This bicarbonate binding site is composed by a triad of well conserved residues, strictly connected to the coordination state of the zinc ion. Moreover, the escort site is a promiscuous site for a variety of ligands, including bicarbonate, at the dimer interface, which may be the route for bicarbonate to the allosteric site.

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http://dx.doi.org/10.1016/bs.enz.2024.05.009DOI Listing

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