Identification of an Amino Acid Metabolism Reprogramming Signature for Predicting Prognosis, Immunotherapy Efficacy, and Drug Candidates in Colon Cancer.

Appl Biochem Biotechnol

Department of Colorectal Surgery, Harbin Medical University Cancer Hospital, Harbin Medial University, Harbin, Heilongjiang Province, People's Republic of China.

Published: September 2024

AI Article Synopsis

  • Colon cancer is the third most common cancer globally, and amino acid metabolism plays a significant role in its development.
  • Researchers identified six key amino acid metabolism genes (AMGs) as prognostic markers and created an amino acid metabolism scoring model (AMS) that categorizes patients into low and high AMS groups.
  • The study found that patients in the low AMS group had better overall survival rates and responded more favorably to immunotherapy compared to those in the high AMS group, indicating the AMS model's potential for predicting prognosis and therapeutic responses in colon cancer.

Article Abstract

Colon cancer ranked third among the most frequently diagnosed cancers worldwide. Amino acid metabolic reprogramming was related to the occurrence and development of colon cancer. We looked for the amino acid metabolism genes (AMGs) associated with amino acid metabolism from molecular signatures database as prognostic markers and constructed amino acid metabolism scoring model (AMS). According to AMS, the patients were divided into high AMS and low AMS groups, and the prognostic characteristics, molecular phenotypes, somatic cell mutation characteristics, immune cell infiltration characteristics, and immunotherapy effect of the two groups were systematically analyzed. Finally, the compounds targeting AMGs were also screened. We screen out 6 prognostic AMGs (P < 0.05) and construct an AMS model based on them. K-M curve indicated that OS in low AMS group was significantly higher than that in high group (P < 0.05), which were validated in multiple datasets. And different AMS groups had different molecular phenotypes, somatic cell mutation characteristics and immune cell infiltration characteristics. Low AMS group had a better effect for immunotherapy. In addition, we predicted potential therapeutic compounds that could bind to AMGs target proteins. AMS model can be used as a hierarchical tool to evaluate the prognosis, immune infiltration characteristics and immunotherapy response ability of colon cancer. And the compounds screened based on AMGs may become new anti-tumor drugs.

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Source
http://dx.doi.org/10.1007/s12010-024-05049-4DOI Listing

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