AI Article Synopsis
- The study investigates how the 3D structure of chromatin affects gene expression in psoriasis by analyzing CD4+ T cells from patients and healthy controls using Hi-C and RNA sequencing.
- Researchers created a detailed 3D chromatin interaction map to identify genomic patterns and key features like superenhancers that are linked to psoriasis.
- The findings aim to enhance understanding of how disruptions in the 3D genome impact gene regulation and may lead to new therapeutic strategies for treating psoriasis.
Article Abstract
A precise regulation of gene expression depends on the accuracy of the 3-dimensional (3D) structure of chromatin; however, the effects of the 3D genome on gene expression in psoriasis remain unknown. In this study, we conducted Hi-C and RNA sequencing on CD4+ T cells collected from 5 patients with psoriasis and 3 healthy controls and constructed a comprehensive 3D chromatin interaction map to delineate the genomic hierarchies, including A/B compartments, topologically associated domains, and chromatin loops. Then, the specific superenhancers related to psoriasis were identified by Hi-C and H3K27ac chromatin immunoprecipitation sequencing data. Subsequently, comprehensive analyses were carried out on the differentially expressed genes that are associated with altered topologically associated domains, loops, and superenhancers in psoriasis. Finally, we screened the candidate target genes and examined the potential functional SNP in psoriasis affected by disruptions of the spatial organization. This study provides a comprehensive reference for examining the 3D genome interactions in psoriasis and elucidating the interplay between spatial organization disruption and gene regulation. We hope that our findings can help clarify the mechanisms underlying the pathogenesis of psoriasis and shed light on the role of 3D genomic structure, therefore informing potential therapeutic approaches.
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| http://dx.doi.org/10.1016/j.jid.2024.08.006 | DOI Listing |
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