This article introduces an advanced Koopman mode decomposition (KMD) technique-coined Featurized Koopman Mode Decomposition (FKMD)-that uses delay embedding and a learned Mahalanobis distance to enhance analysis and prediction of high-dimensional dynamical systems. The delay embedding expands the observation space to better capture underlying manifold structures, while the Mahalanobis distance adjusts observations based on the system's dynamics. This aids in featurizing KMD in cases where good features are not a priori known. We show that FKMD improves predictions for a high-dimensional linear oscillator, a high-dimensional Lorenz attractor that is partially observed, and a cell signaling problem from cancer research.
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http://dx.doi.org/10.1063/5.0220277 | DOI Listing |
Anat Rec (Hoboken)
January 2025
Department of Biology and Marine Biology, University of North Carolina Wilmington, Wilmington, North Carolina, USA.
The pygmy sperm whale (Kogia breviceps) possesses an exocrine gland associated with its false gill slit pigmentation pattern. The cervical gill slit gland is a compound tubuloalveolar gland that produces a holocrine secretion and displays maturational changes in size and secretory histology. While the morphology of the cervical gill slit gland has been described in detail, to date, the chemical composition of its secretion remains uncharacterized.
View Article and Find Full Text PDFBiomimetics (Basel)
November 2024
The Polytechnic School, Ira Fulton School of Engineering, Arizona State University, Mesa, AZ 85212, USA.
Bio-inspired robots are devices that mimic an animal's motions and structures in nature. Worm robots are robots that are inspired by the movements of the worm in nature. This robot has different applications such as medicine and rescue plans.
View Article and Find Full Text PDFChaos
September 2024
Department of Mathematics and Statistics, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA.
In this paper, we present a new method of performing extended dynamic mode decomposition (EDMD) on systems, which admit a symbolic representation. EDMD generates estimates of the Koopman operator, K, for a dynamical system by defining a dictionary of observables on the space and producing an estimate, Km, which is restricted to be invariant on the span of this dictionary. A central question for the EDMD is what should the dictionary be? We consider a class of chaotic dynamical systems with a known or estimable generating partition.
View Article and Find Full Text PDFNonlinear Dyn
August 2024
Institute for Mechanical Systems, ETH Zürich, Leonhardstrasse 21, 8092 Zurich, Switzerland.
Unlabelled: Dynamic mode decomposition (DMD) and its variants, such as extended DMD (EDMD), are broadly used to fit simple linear models to dynamical systems known from observable data. As DMD methods work well in several situations but perform poorly in others, a clarification of the assumptions under which DMD is applicable is desirable. Upon closer inspection, existing interpretations of DMD methods based on the Koopman operator are not quite satisfactory: they justify DMD under assumptions that hold only with probability zero for generic observables.
View Article and Find Full Text PDFChaos
August 2024
Institute of Strength of Materials, Graz University of Technology, Kopernikusgasse 24/I, 8010 Graz, Austria.
Many physical systems exhibit translational invariance, meaning that the underlying physical laws are independent of the position in space. Data driven approximations of the infinite dimensional but linear Koopman operator of non-linear dynamical systems need to be physically informed in order to respect such physical symmetries. In the current work, we introduce a translation invariant extended dynamic mode decomposition (tieDMD) for coupled non-linear systems on periodic domains.
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