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: a -based indexing algorithm for kilohertz serial crystallography. | LitMetric

AI Article Synopsis

Article Abstract

Serial crystallography (SX) involves combining observations from a very large number of diffraction patterns coming from crystals in random orientations. To compile a complete data set, these patterns must be indexed ( their orientation determined), integrated and merged. Introduced here is (-powered robust optimization) , a robust and adaptable indexing algorithm developed using the framework. is capable of operating on graphics processing units (GPUs), central processing units (CPUs) and other hardware accelerators supported by , ensuring compatibility with a wide variety of computational setups. In tests, outpaces existing solutions, indexing thousands of frames per second when running on GPUs, which positions it as an attractive candidate to produce real-time indexing and user feedback. The algorithm streamlines some of the ideas introduced by previous indexers like real-space grid search [Gildea, Waterman, Parkhurst, Axford, Sutton, Stuart, Sauter, Evans & Winter (2014). D, 2652-2666] and [Gevorkov, Yefanov, Barty, White, Mariani, Brehm, Tolstikova, Grigat & Chapman (2019). A, 694-704] and refines them using faster and principled robust optimization techniques which result in a concise code base consisting of less than 500 lines. On the basis of evaluations across four proteins, consistently matches, and in certain instances outperforms, established algorithms such as and [Powell (1999). D, 1690-1695], occasionally amplifying the quality of the consolidated data while achieving superior indexing speed. The inherent modularity of and the versatility of code bases facilitate its deployment into a wide array of architectures, software platforms and bespoke applications, highlighting its prospective significance in SX.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11299607PMC
http://dx.doi.org/10.1107/S1600576724003182DOI Listing

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