Federated brain tumor segmentation: An extensive benchmark.

Med Image Anal

INSA Lyon, Universite Claude Bernard Lyon 1, CNRS, Inserm, CREATIS UMR 5220, U1294, F-69621 Lyon, France.

Published: October 2024

Recently, federated learning has raised increasing interest in the medical image analysis field due to its ability to aggregate multi-center data with privacy-preserving properties. A large amount of federated training schemes have been published, which we categorize into global (one final model), personalized (one model per institution) or hybrid (one model per cluster of institutions) methods. However, their applicability on the recently published Federated Brain Tumor Segmentation 2022 dataset has not been explored yet. We propose an extensive benchmark of federated learning algorithms from all three classes on this task. While standard FedAvg already performs very well, we show that some methods from each category can bring a slight performance improvement and potentially limit the final model(s) bias toward the predominant data distribution of the federation. Moreover, we provide a deeper understanding of the behavior of federated learning on this task through alternative ways of distributing the pooled dataset among institutions, namely an Independent and Identical Distributed (IID) setup, and a limited data setup. Our code is available at (https://github.com/MatthisManthe/Benchmark_FeTS2022).

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.media.2024.103270DOI Listing

Publication Analysis

Top Keywords

federated learning
12
federated brain
8
brain tumor
8
tumor segmentation
8
extensive benchmark
8
benchmark federated
8
federated
6
segmentation extensive
4
learning raised
4
raised increasing
4

Similar Publications

Introduction: Motor learning, in addition to influencing the practice of physical activity, affects cognitive skills related to prediction and decision. One key principle in sports training is designing exercise programs that optimize cognitive-motor performance, based on the Challenge Point Framework (CPF). The aim of this study is to investigate the effect of different levels of work difficulty on cognitive-perceptual indicators in table tennis beginners.

View Article and Find Full Text PDF

Background: Comprehensive clinical data regarding factors influencing the individual disease course of patients with movement disorders treated with deep brain stimulation might help to better understand disease progression and to develop individualized treatment approaches.

Methods: The clinical core data set was developed by a multidisciplinary working group within the German transregional collaborative research network ReTune. The development followed standardized methodology comprising review of available evidence, a consensus process and performance of the first phase of the study.

View Article and Find Full Text PDF

Improving Nanoparticle Size Estimation from Scanning Transmission Electron Micrographs with a Multislice Surrogate Model.

Nano Lett

January 2025

Electron Microscopy Center, Empa - Swiss Federal Laboratories for Materials Science and Technology, Überlandstrasse 129, 8600 Dübendorf, Switzerland.

The computational cost of simulating scanning transmission electron microscopy (STEM) images limits the curation of large enough data sets to train accurate and robust machine learning networks for deep feature extraction from atomically resolved STEM images. For nanoparticle size estimation in particular, a diverse data set is essential due to the large variations in size, shape, crystallinity, orientation, and dynamical diffraction effects in experimental data. To address this, we train a 3D convolutional neural network to predict STEM images from voxelized atomic models, achieving a 100x speed-up compared to traditional multislice simulations while maintaining high image quality.

View Article and Find Full Text PDF

The T22 protocol is an animal model of forced internal desynchronization, in which rats are exposed to an 11:11 light-dark (LD) cycle. This non-invasive protocol induces the dissociation of circadian rhythms in adult rats, making it possible to study the effects of circadian disruption on physiological and behavioral processes such as learning, memory, and emotional responses. However, the effects of circadian dissociation during other developmental stages, such as adolescence, remain unexplored.

View Article and Find Full Text PDF

Online ensemble model compression for nonstationary data stream learning.

Neural Netw

January 2025

School of Computer Science, University of Birmingham, Edgbaston, Birmingham, B15 2TT, United Kingdom.

Learning from data streams that emerge from nonstationary environments has many real-world applications and poses various challenges. A key characteristic of such a task is the varying nature of the underlying data distributions over time (concept drifts). However, the most common type of data stream learning approach are ensemble approaches, which involve the training of multiple base learners.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!