The analysis of histopathology images with artificial intelligence aims to enable clinical decision support systems and precision medicine. The success of such applications depends on the ability to model the diverse patterns observed in pathology images. To this end, we present Virchow, the largest foundation model for computational pathology to date. In addition to the evaluation of biomarker prediction and cell identification, we demonstrate that a large foundation model enables pan-cancer detection, achieving 0.95 specimen-level area under the (receiver operating characteristic) curve across nine common and seven rare cancers. Furthermore, we show that with less training data, the pan-cancer detector built on Virchow can achieve similar performance to tissue-specific clinical-grade models in production and outperform them on some rare variants of cancer. Virchow's performance gains highlight the value of a foundation model and open possibilities for many high-impact applications with limited amounts of labeled training data.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11485232PMC
http://dx.doi.org/10.1038/s41591-024-03141-0DOI Listing

Publication Analysis

Top Keywords

foundation model
16
computational pathology
8
rare cancers
8
training data
8
foundation
4
model clinical-grade
4
clinical-grade computational
4
pathology rare
4
cancers detection
4
detection analysis
4

Similar Publications

VcaNet: Vision Transformer with fusion channel and spatial attention module for 3D brain tumor segmentation.

Comput Biol Med

January 2025

College of Physics and Electronic Information Engineering, Zhejiang Normal University, Jinhua, 321004, China; Zhejiang Institute of Optoelectronics, Jinhua, 321004, China. Electronic address:

Accurate segmentation of brain tumors from MRI scans is a critical task in medical image analysis, yet it remains challenging due to the complex and variable nature of tumor shapes and sizes. Traditional convolutional neural networks (CNNs), while effective for local feature extraction, struggle to capture long-range dependencies crucial for 3D medical image analysis. To address these limitations, this paper presents VcaNet, a novel architecture that integrates a Vision Transformer (ViT) with a fusion channel and spatial attention module (CBAM), aimed at enhancing 3D brain tumor segmentation.

View Article and Find Full Text PDF

Background: Rotator cuff repair (RCR) is a frequently performed outpatient orthopaedic surgery, with substantial financial implications for health-care systems. Time-driven activity-based costing (TDABC) is a method for nuanced cost analysis and is a valuable tool for strategic health-care decision-making. The aim of this study was to apply the TDABC methodology to RCR procedures to identify specific avenues to optimize cost-efficiency within the health-care system in 2 critical areas: (1) the reduction of variability in the episode duration, and (2) the standardization of suture anchor acquisition costs.

View Article and Find Full Text PDF

Background: Risk factors for gluteal tears include age-related deterioration, female sex, and increased body mass index. As the literature that supports the sagittal relationship between the lumbar spine and the hip is increasing, there may be a parallel relationship between the perturbations in spinopelvic alignment caused by lumbar spine disease and gluteal muscle tears. Because no prior studies other than single-institution series have reported on this phenomenon, we investigated spine-abductor syndrome at the population level.

View Article and Find Full Text PDF

As a traditional Chinese medicine, Sanao decoction (SAD) has been used to treat chronic obstructive pulmonary disease (COPD) for multi-years. However, the potential mechanism and targets for its effects of SAD remain unknown. The 94 components of SAD were identified by UPLC-LTQ-Orbitrap MS.

View Article and Find Full Text PDF

Children with neurodegenerative disease often have debilitating gastrointestinal symptoms. We hypothesized that this may be due at least in part to underappreciated degeneration of neurons in the enteric nervous system (ENS), the master regulator of bowel function. To test this hypothesis, we evaluated mouse models of neuronal ceroid lipofuscinosis type 1 and 2 (CLN1 and CLN2 disease, respectively), neurodegenerative lysosomal storage disorders caused by deficiencies in palmitoyl protein thioesterase-1 and tripeptidyl peptidase-1, respectively.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!