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Protocol for high-plex, whole-slide imaging of human formalin-fixed paraffin-embedded tissue using PhenoCycler-Fusion. | LitMetric

Protocol for high-plex, whole-slide imaging of human formalin-fixed paraffin-embedded tissue using PhenoCycler-Fusion.

STAR Protoc

Queensland Spatial Biology Centre, Wesley Research Institute, Level 8 East Wing, The Wesley Hospital, Auchenflower, QLD 4066, Australia; Frazer Institute, Faculty of Medicine, The University of Queensland, Brisbane, QLD 4102, Australia. Electronic address:

Published: September 2024

AI Article Synopsis

  • Single-cell spatial analysis of proteins is crucial for gaining insights into biology, especially in cancer research.
  • The text outlines an automated protocol for multi-slide immunofluorescence staining and imaging of human head and neck cancer samples using PhenoCycler-Fusion 2.0 technology.
  • It includes detailed steps for tissue preparation, staining with immunophenotyping markers, and subsequent analysis procedures, with more specifics available in a referenced study by Jhaveri et al.

Article Abstract

Single-cell spatial analysis of proteins is rapidly becoming increasingly important in revealing biological insights. Here, we present a protocol for automated high-plex multi-slide immunofluorescence staining and imaging of human head and neck cancer formalin-fixed paraffin-embedded (FFPE) sections using PhenoCycler-Fusion 2.0 technology. We describe steps for preparing human head and neck cancer FFPE tissues, staining with a panel of immunophenotyping markers, and Flow Cell assembly. We then detail procedures for setting up for a PhenoCycler-Fusion run, post-run Flow Cell removal, and downstream analyses. For complete details on the use and execution of this protocol, please refer to Jhaveri et al..

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11314888PMC
http://dx.doi.org/10.1016/j.xpro.2024.103226DOI Listing

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