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Knock down to level up: Reframing RNAi for invertebrate ecophysiology. | LitMetric

Knock down to level up: Reframing RNAi for invertebrate ecophysiology.

Comp Biochem Physiol A Mol Integr Physiol

Department of Biology, St. Francis Xavier University, 2321 Notre Dame Ave, Antigonish, NS, Canada B2G 2W5.

Published: November 2024

AI Article Synopsis

  • Comparative ecophysiologists are encouraged to use RNA interference (RNAi) as a tool to study physiological processes in non-model invertebrates, as it is often under-utilized in their research.
  • RNAi allows for temporary manipulation of gene expression, making it accessible both technically and financially for researchers who may lack resources for other genetic techniques.
  • The article provides an introduction to RNAi, outlines a workflow for identifying gene targets and validating knockdowns, and offers a framework for hypothesis testing in invertebrate ecophysiology.

Article Abstract

Comparative ecophysiologists strive to understand physiological problems in non-model organisms, but molecular tools such as RNA interference (RNAi) are under-used in our field. Here, we provide a framework for invertebrate ecophysiologists to use RNAi to answer questions focused on physiological processes, rather than as a tool to investigate gene function. We specifically focus on non-model invertebrates, in which the use of other genetic tools (e.g., genetic knockout lines) is less likely. We argue that because RNAi elicits a temporary manipulation of gene expression, and resources to carry out RNAi are technically and financially accessible, it is an effective tool for invertebrate ecophysiologists. We cover the terminology and basic mechanisms of RNA interference as an accessible introduction for "non-molecular" physiologists, include a suggested workflow for identifying RNAi gene targets and validating biologically relevant gene knockdowns, and present a hypothesis-testing framework for using RNAi to answer common questions in the realm of invertebrate ecophysiology. This review encourages invertebrate ecophysiologists to use these tools and workflows to explore physiological processes and bridge genotypes to phenotypes in their animal(s) of interest.

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Source
http://dx.doi.org/10.1016/j.cbpa.2024.111703DOI Listing

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