To study the kinetics of phase separation in active matter systems, we consider models that impose a Vicsek-type self-propulsion rule on otherwise passive particles interacting via the Lennard-Jones potential. Two types of kinetics are of interest: one conserves the total momentum of all the constituents and the other does not. We carry out molecular dynamics simulations to obtain results on structural, growth, and aging properties. Results from our studies, with various finite boxes, show that there exist scalings with respect to the system sizes, in both the latter quantities, as in the standard passive cases. We have exploited this scaling picture to accurately estimate the corresponding exponents, in the thermodynamically large system size limit, for power-law time dependences. It is shown that certain analytical functions describe the behavior of these quantities quite accurately, including the finite-size limits. Our results demonstrate that even though the conservation of velocity has at best weak effects on the dynamics of evolution in the thermodynamic limit, the finite-size behavior is strongly influenced by the presence (or the absence) of it.
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http://dx.doi.org/10.1103/PhysRevE.109.064607 | DOI Listing |
Heliyon
January 2025
Institute of Chemical Sciences, University of Swat, Swat, 19120, Khyber Pakhtunkhwa, Pakistan.
In recent years, antibiotic pollution has become a major environmental concern. The extensive production and widespread use of prescribed antibiotics have significantly impacted ecosystems. The main objective of the present study is to investigate the photocatalytic degradation of the antibiotic norfloxacin (NFX) under visible light.
View Article and Find Full Text PDFChem Mater
January 2025
Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.
New computational tools for solid-state synthesis recipe design are needed in order to accelerate the experimental realization of novel functional materials proposed by high-throughput materials discovery workflows. This work contributes a cellular automaton simulation framework for predicting the time-dependent evolution of intermediate and product phases during solid-state reactions as a function of precursor choice and amount, reaction atmosphere, and heating profile. The simulation captures the effects of reactant particle spatial distribution, particle melting, and reaction atmosphere.
View Article and Find Full Text PDFRNA polymerase II (RNAPII) is regulated by sequence-specific transcription factors (TFs) and the pre-initiation complex (PIC): TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, Mediator. TFs and Mediator contain intrinsically-disordered regions (IDRs) and form phase-separated condensates, but how IDRs control RNAPII function remains poorly understood. Using purified PIC factors, we developed a Real-time In-vitro Fluorescence Transcription assay (RIFT) for second-by-second visualization of RNAPII transcription at hundreds of promoters simultaneously.
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January 2025
Bioinformatics Programming Lab, Department of Biotechnology, School of Bio Sciences and Technology, VIT, Vellore 632014, India.
Several neurodegenerative diseases are associated with the deposition of amyloid fibrils. Although these diseases are irreversible, knowing the aggregation mechanism is useful in developing drugs that can arrest or decrease the aggregation rate. In this study, we are interested in investigating the effect of Coomassie brilliant blue (CBB G-250) on the aggregation of hen egg white lysozyme (HEWL) at pH 7.
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January 2025
School of Chemistry and Chemical Engineering, Chongqing University of Technology, Chongqing 400054, China.
To further improve the leaching behavior of chromite in the submolten salt medium of NaOH-HO, a microwave roasting pretreatment for chromite is proposed in the present work. Effects of the roasting pretreatment modes and reaction parameters on the leaching rate of Cr were systematically investigated. The results showed that the leaching rate of Cr from the chromite ore could be greatly boosted after microwave roasting.
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