AI Article Synopsis

  • Ants are crucial insects in ecosystems, with many species yet to have genomic resources, particularly in East and Southeast Asia, hindering research on their evolution and adaptation.
  • Researchers compiled and annotated the genomes for two Chinese ant species, Odontoponera transversa and Camponotus friedae, to enhance understanding of ant evolution.
  • The draft genomes showed good quality, with O. transversa having 339 Mb and C. friedae 233 Mb, and revealed differences in their repeat content and the number of protein-coding genes, paired with complete mitochondrial genomes for both species.

Article Abstract

Objectives: Ants are ecologically dominant insects in most terrestrial ecosystems, with more than 14,000 extant species in about 340 genera recorded to date. However, genomic resources are still scarce for most species, especially for species endemic in East or Southeast Asia, limiting the study of phylogeny, speciation and adaptation of this evolutionarily successful animal lineage. Here, we assemble and annotate the genomes of Odontoponera transversa and Camponotus friedae, two ant species with a natural distribution in China, to facilitate future study of ant evolution.

Data Description: We obtained a total of 16 Gb and 51 Gb PacBio HiFi data for O. transversa and C. friedae, respectively, which were assembled into the draft genomes of 339 Mb for O. transversa and 233 Mb for C. friedae. Genome assessments by multiple metrics showed good completeness and high accuracy of the two assemblies. Gene annotations assisted by RNA-seq data yielded a comparable number of protein-coding genes in the two genomes (10,892 for O. transversa and 11,296 for C. friedae), while repeat annotations revealed a remarkable difference of repeat content between these two ant species (149.4 Mb for O. transversa versus 49.7 Mb for C. friedae). Besides, complete mitochondrial genomes for the two species were assembled and annotated.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11251112PMC
http://dx.doi.org/10.1186/s12863-024-01253-7DOI Listing

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