Complete genome sequence of a novel Pseudomonas sp. IT1137 isolated from Antarctic intertidal sediment showing potential for alkane degradation at low temperatures.

Mar Genomics

School of Oceanography, Shanghai Jiao Tong University, Shanghai 200030, China; Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai 200136, China; Shanghai Key Laboratory of Polar Life and Environment Sciences, Shanghai Jiao Tong University, Shanghai 200030, China; Key Laboratory of Polar Ecosystem and Climate Change, Shanghai Jiao Tong University, Ministry of Education, Shanghai 200030, China. Electronic address:

Published: August 2024

AI Article Synopsis

  • - Pseudomonas species play a vital role in ecosystems due to their diverse metabolic capabilities and wide ecological reach, and strain IT1137 was specifically isolated from Antarctic intertidal sediment.
  • - The genome of Pseudomonas sp. IT1137 consists of a large circular chromosome and a plasmid, containing thousands of protein-coding genes as well as genes related to nutrient cycling, alkane degradation, and other functions.
  • - This strain shows promise for biotechnological uses such as bioremediation and the production of valuable secondary metabolites, enhancing our understanding of bacterial survival and roles in cold coastal environments.

Article Abstract

Pseudomonas species are known for their diverse metabolic abilities and broad ecological distribution. They are fundamental components of bacterial communities and perform essential ecological functions in the environment. A psychrotrophic Pseudomonas sp. IT1137 was isolated from intertidal sediment in the coastal region of the Fildes Peninsula, King George Island, Antarctica. The strain contained a circular chromosome of 5,346,697 bp with a G + C content of 61.66 mol% and one plasmid of 4481 bp with a G + C content of 64.61 mol%. A total of 4848 protein-coding genes, 65 tRNA genes and 15 rRNA genes were obtained. Genome sequence analysis revealed that strain IT1137 not only is a potentially novel species of the genus Pseudomonas but also harbors functional genes related to nitrogen, sulfur and phosphorus cycling. In addition, genes involved in alkane degradation, ectoine synthesis and cyclic lipopeptide (CLP) production were detected in the bacterial genome. The results indicate the potential of the strain Pseudomonas sp. IT1137 for biotechnological applications such as bioremediation and secondary metabolite production and are helpful for understanding bacterial adaptability and ecological function in cold coastal environments.

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http://dx.doi.org/10.1016/j.margen.2024.101122DOI Listing

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Article Synopsis
  • Two new Gram-stain-negative bacterial strains, IT1137 and S025, were isolated from sediments in Maritime Antarctica and soil in the High Arctic, respectively.
  • Genetic and phenotypic tests (including 16S rRNA sequencing and various biochemical tests) were conducted to analyze the characteristics of these strains.
  • The analysis indicated that these strains are distinct from known species, leading to the proposal of two new species names for them.
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Complete genome sequence of a novel Pseudomonas sp. IT1137 isolated from Antarctic intertidal sediment showing potential for alkane degradation at low temperatures.

Mar Genomics

August 2024

School of Oceanography, Shanghai Jiao Tong University, Shanghai 200030, China; Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai 200136, China; Shanghai Key Laboratory of Polar Life and Environment Sciences, Shanghai Jiao Tong University, Shanghai 200030, China; Key Laboratory of Polar Ecosystem and Climate Change, Shanghai Jiao Tong University, Ministry of Education, Shanghai 200030, China. Electronic address:

Article Synopsis
  • - Pseudomonas species play a vital role in ecosystems due to their diverse metabolic capabilities and wide ecological reach, and strain IT1137 was specifically isolated from Antarctic intertidal sediment.
  • - The genome of Pseudomonas sp. IT1137 consists of a large circular chromosome and a plasmid, containing thousands of protein-coding genes as well as genes related to nutrient cycling, alkane degradation, and other functions.
  • - This strain shows promise for biotechnological uses such as bioremediation and the production of valuable secondary metabolites, enhancing our understanding of bacterial survival and roles in cold coastal environments.
View Article and Find Full Text PDF

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