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[Application of whole exome sequencing technology in the diagnosis of hereditary eye diseases]. | LitMetric

[Application of whole exome sequencing technology in the diagnosis of hereditary eye diseases].

Zhonghua Yi Xue Za Zhi

Genetics Center of Obstetrics and Gynecology, Obstetrics & Gynecology Hospital of Fudan University, Shanghai 200011, China.

Published: July 2024

AI Article Synopsis

  • - The study evaluated whole exome sequencing (WES) for diagnosing hereditary eye diseases in 24 patients seeking genetic counseling at Fudan University, focusing on those with congenital eye disorders and excluding known causes.
  • - WES resulted in successful diagnoses for 20 out of 24 families (83.3%), identifying 30 unique genetic variants across 21 genes, with 19 of those variants being newly reported.
  • - Additionally, functional analyses, including RT-qPCR and minigene constructs, provided insights into the effects of specific mutations on mRNA splicing, highlighting WES's effectiveness in understanding the genetic basis of these diseases.

Article Abstract

To evaluate the application of whole exome sequencing (WES) in the diagnosis of hereditary eye diseases. A total of 24 patients who came to the Obstetrics and Gynecology Hospital of Fudan University for reproductive genetic counseling from December 2020 to December 2023 with the main complaint of congenital eye disorders were included in this study. All cases had no known infections or exposure to known teratogenic drugs, karyotype and chromosome microarray analysis (CMA) abnormalities. Genomic DNA was extracted from the peripheral blood of the probands and their family members and tested for WES. Among them, three individual WES and 21 Trio WES were performed. Potential pathogenic sites were screened and analyzed by Sanger sequencing. For RPGRIP1:c.1611+26G>A site, minigene vector was constructed and RT-qPCR was performed to detect the effect of mRNA splicing. A total of 24 families were collected in this study, of which 20 yielded positive results, achieving a diagnosis rate of 83.3% (20/24). The results involved 21 genes and identified 30 distinct variants, 19 of which were new variants reported. Prenatal diagnostic analysis of family 3 revealed that the fetus carried a c.6970G>T heterozygous nonsense mutation in the PRPF8 gene. The results of RT-PCR with the minigene vector at the non-classical splice site in family 24 indicated that the transcription product of the mutant plasmid was partially retained 104 bp in intron 12, resulting in a p.Glu538Valfs*12 alteration of the protein. The high detection rate of WES in the diagnosis of hereditary eye diseases further supports the advantages of its application as an important molecular detection tool for determining the etiology of hereditary eye diseases.

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Source
http://dx.doi.org/10.3760/cma.j.cn112137-20231220-01429DOI Listing

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