Many locks to one key: N-acetylneuraminic acid binding to proteins.

IUCrJ

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.

Published: September 2024

AI Article Synopsis

  • - Sialic acids, such as N-acetylneuraminic acid (Neu5Ac), are important for cell interactions and play roles in various biological processes across different organisms, including immune response and pathogen interactions.
  • - The review discusses how Neu5Ac binds to proteins in Gram-negative bacteria, revealing that protein structures show a lot of variability in binding pockets, contrary to what was previously thought.
  • - This variability suggests that drug design targeting these Neu5Ac-binding proteins needs to be customized for different bacterial species, highlighting the complex link between protein structure and Neu5Ac recognition.

Article Abstract

Sialic acids play crucial roles in cell surface glycans of both eukaryotic and prokaryotic organisms, mediating various biological processes, including cell-cell interactions, development, immune response, oncogenesis and host-pathogen interactions. This review focuses on the β-anomeric form of N-acetylneuraminic acid (Neu5Ac), particularly its binding affinity towards various proteins, as elucidated by solved protein structures. Specifically, we delve into the binding mechanisms of Neu5Ac to proteins involved in sequestering and transporting Neu5Ac in Gram-negative bacteria, with implications for drug design targeting these proteins as antimicrobial agents. Unlike the initial assumptions, structural analyses revealed significant variability in the Neu5Ac binding pockets among proteins, indicating diverse evolutionary origins and binding modes. By comparing these findings with existing structures from other systems, we can effectively highlight the intricate relationship between protein structure and Neu5Ac recognition, emphasizing the need for tailored drug design strategies to inhibit Neu5Ac-binding proteins across bacterial species.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11364026PMC
http://dx.doi.org/10.1107/S2052252524005360DOI Listing

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