In recent years, there has been a notable increase in the scientific community's interest in rational protein design. The prospect of designing an amino acid sequence that can reliably fold into a desired three-dimensional structure and exhibit the intended function is captivating. However, a major challenge in this endeavor lies in accurately predicting the resulting protein structure. The exponential growth of protein databases has fueled the advancement of the field, while newly developed algorithms have pushed the boundaries of what was previously achievable in structure prediction. In particular, using deep learning methods instead of brute force approaches has emerged as a faster and more accurate strategy. These deep-learning techniques leverage the vast amount of data available in protein databases to extract meaningful patterns and predict protein structures with improved precision. In this article, we explore the recent developments in the field of protein structure prediction. We delve into the newly developed methods that leverage deep learning approaches, highlighting their significance and potential for advancing our understanding of protein design.
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http://dx.doi.org/10.1007/s41061-024-00469-6 | DOI Listing |
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December 2024
College of Electrical Engineering, Northeast Electric Power University, Jilin, 132012, China.
The scattering of tiny particles in the atmosphere causes a haze effect on remote sensing images captured by satellites and similar devices, significantly disrupting subsequent image recognition and classification. A generative adversarial network named TRPC-GAN with texture recovery and physical constraints is proposed to mitigate this impact. This network not only effectively removes haze but also better preserves the texture information of the original remote sensing image, thereby enhancing the visual quality of the dehazed image.
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December 2024
Department of Medical Ultrasound, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, No. 16766, Jingshi Road, Jinan, 250014, Shandong, People's Republic of China.
This study aimed to explore a deep learning radiomics (DLR) model based on grayscale ultrasound images to assist radiologists in distinguishing between benign breast lesions (BBL) and malignant breast lesions (MBL). A total of 382 patients with breast lesions were included, comprising 183 benign lesions and 199 malignant lesions that were collected and confirmed through clinical pathology or biopsy. The enrolled patients were randomly allocated into two groups: a training cohort and an independent test cohort, maintaining a ratio of 7:3.
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December 2024
Artificial Intelligence in Medical Sciences Research Center, Smart University of Medical Sciences, Tehran, Iran.
Failure to predict stroke promptly may lead to delayed treatment, causing severe consequences like permanent neurological damage or death. Early detection using deep learning (DL) and machine learning (ML) models can enhance patient outcomes and mitigate the long-term effects of strokes. The aim of this study is to compare these models, exploring their efficacy in predicting stroke.
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December 2024
School of Public Health, Chongqing Medical University, 1 Yixueyuan Road, Yuzhong District, Chongqing, 400016, China.
The study aims to address the critical issue of toxic side effects resulting from drug combinations, which can significantly increase health risks, clinical complications, and lead to drug being withdrawn from the market. A model named TSEDDI (toxic side effects of drug-drug interaction) has been developed to improve the identification of drug pairs that may induce toxicity or adverse reactions. By utilizing drug chemical structures and diverse proteins, we employ a convolutional neural network (CNN) to extract features from molecular images, enzyme proteins, transporter proteins, and target proteins.
View Article and Find Full Text PDFLithofacies classification and identification are of great significance in the exploration and evaluation of tight sandstone reservoirs. Existing methods of lithofacies identification in tight sandstone reservoirs face issues such as lengthy manual classification, strong subjectivity of identification, and insufficient sample datasets, which make it challenging to analyze the lithofacies characteristics of these reservoirs during oil and gas exploration. In this paper, the Fuyu oil formation in the Songliao Basin is selected as the target area, and an intelligent method for recognizing the lithophysics reservoirs in tight sandstone based on hybrid multilayer perceptron (MLP) and multivariate time series (MTS-Mixers) is proposed.
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