The pilot-scale genome-wide association study in the US proso millet identified twenty marker-trait associations for five morpho-agronomic traits identifying genomic regions for future studies (e.g. molecular breeding and map-based cloning). Proso millet (Panicum miliaceum L.) is an ancient grain recognized for its excellent water-use efficiency and short growing season. It is an indispensable part of the winter wheat-based dryland cropping system in the High Plains of the USA. Its grains are endowed with high nutritional and health-promoting properties, making it increasingly popular in the global market for healthy grains. There is a dearth of genomic resources in proso millet for developing molecular tools to complement conventional breeding for developing high-yielding varieties. Genome-wide association study (GWAS) is a widely used method to dissect the genetics of complex traits. In this pilot study of the first-ever GWAS in the US proso millet, 71 globally diverse genotypes of 109 the US proso millet core collection were evaluated for five major morpho-agronomic traits at two locations in western Nebraska, and GWAS was conducted to identify single nucleotide polymorphisms (SNPs) associated with these traits. Analysis of variance showed that there was a significant difference among the genotypes, and all five traits were also found to be highly correlated with each other. Sequence reads from genotyping-by-sequencing (GBS) were used to identify 11,147 high-quality bi-allelic SNPs. Population structure analysis with those SNPs showed stratification within the core collection. The GWAS identified twenty marker-trait associations (MTAs) for the five traits. Twenty-nine putative candidate genes associated with the five traits were also identified. These genomic regions can be used to develop genetic markers for marker-assisted selection in proso millet breeding.

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00425-024-04465-4DOI Listing

Publication Analysis

Top Keywords

proso millet
28
genome-wide association
12
association study
12
marker-trait associations
12
traits
8
millet panicum
8
panicum miliaceum
8
identified twenty
8
twenty marker-trait
8
morpho-agronomic traits
8

Similar Publications

This study investigates the production and nutritional quality of cv. Mombasa grass under varying levels of water stress and nitrogen (N) fertilization, aiming to enhance forage production in harsh environments. Four irrigation levels (5760, 6912, 4608, and 3456 m ha year) and three N fertilizer doses (115, 57.

View Article and Find Full Text PDF
Article Synopsis
  • A major gene locus, SC9.1, was identified as the key regulator of brown seed color in broomcorn millet, a cereal crop known for its diverse seed colors.
  • Through genetic mapping and analysis of crossbred populations, researchers found that the trait is controlled by a single dominant locus located on chromosome 9.
  • The gene longmi004412 was pinpointed as the specific gene responsible for the brown seed coloration, paving the way for future advancements in crop breeding and genetic research.
View Article and Find Full Text PDF

To investigate the effects of row ratio configurations on intercropping advantages and related rhizosphere microbial communities, a field experiment involving five treatments of different rows of broomcorn millet, i.e., P1M1 (1 row of broomcorn millet intercropped with 1 row of alfalfa), P2M3, P1M2, P1M3 and broomcorn millet alone (SP), was conducted on the Loess Plateau of China.

View Article and Find Full Text PDF

Phytotoxicity Study of (Amino)imidazo[1,2-]pyridine Derivatives Toward the Control of , , and Weeds.

J Agric Food Chem

January 2025

Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), Universidade de Brasília, 70904-970 Brasília, DF, Brazil.

In this work, several imidazo[1,2-]pyridines were synthesized through the Groebke-Blackburn-Bienaymé three-component reaction (GBB-3CR), and their phytotoxicity was evaluated by the influence on the growth of wheat coleoptiles and three important agricultural seeds (, , and ) at test concentrations of 1000, 300, 100, 30, and 10 μM. A structure-activity relationship was established, showing the importance of halogen groups at the position of the attached aromatic ring and the presence of a cyclohexylamine group for greater activity. Post-modification of some GBB-3CR adducts was carried out, leading to imidazo[1,2-]pyridine-tetrazole hybrids, which were also evaluated in these bioassays.

View Article and Find Full Text PDF

The transition to sedentary agricultural societies in northern China fuelled considerable demographic growth from 5000 to 2000 BC. In this article, we draw together archaeobotanical, zooarchaeological and bioarchaeological data and explore the relationship between several aspects of this transition, with an emphasis on the millet-farming productivity during the Yangshao period and how it facilitated changes in animal husbandry and consolidation of sedentism. We place the period of domestication (the evolution of non-shattering, initial grain size increase and panicle development) between 8300 and 4300 BC.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!