Population genetics of (Cephalopoda: Ommastrephidae) in the northwest Pacific Ocean via GBS sequencing.

Open Life Sci

College of Marine Living Resource Sciences and Management, Shanghai Ocean University, Shanghai, 201306, China.

Published: June 2024

The common squid, , is an important commercial species that inhabits the northwest Pacific Ocean, particularly the East Japan Sea, the Pacific coast of Japan, and the East China Sea. In this study, we chose 29 individuals from three areas: one type from the Sea of Japan and two types from the East China Sea. A total of 43,529 SNPs were obtained using genotyping-by-sequencing (GBS). Our analyses revealed low genetic diversity and genetic differentiation in each type. Heterozygote deficiency and inbreeding have caused this low level of genetic diversity. Population structure analysis indicated that the three types were genetically similar, which may be attributed to strong gene flow combined with the demographic history events during the last 2 million years. This new GBS application technique provides valuable information for the conservation of marine species genetics and could be useful for the effective management of this resource.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11211871PMC
http://dx.doi.org/10.1515/biol-2022-0876DOI Listing

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