The intricate mechanisms in the biosynthesis of terpenes belong to the most challenging problems in natural product chemistry. Methods to address these problems include the structure-based site-directed mutagenesis of terpene synthases, computational approaches, and isotopic labeling experiments. The latter approach has a long tradition in biosynthesis studies and has recently experienced a revival, after genome sequencing enabled rapid access to biosynthetic genes and enzymes. Today, this allows for a combined approach in which isotopically labeled substrates can be incubated with recombinant terpene synthases. These clearly defined reaction setups can give detailed mechanistic insights into the reactions catalyzed by terpene synthases, and recent developments have substantially deepened our understanding of terpene biosynthesis. This chapter will discuss the state of the art and introduce some of the most important methods that make use of isotopic labelings in mechanistic studies on terpene synthases.
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http://dx.doi.org/10.1016/bs.mie.2024.01.011 | DOI Listing |
J Fungi (Basel)
December 2024
Hubei Key Laboratory of Natural Medicinal Chemistry and Resource Evaluation, School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.
is an edible and medicinal macrofungus with significant biological activity and broad pharmaceutical prospects that has received increasing attention in recent years. Although it is an important resource for macrofungi, knowledge of it remains limited. In this study, we sequenced, de novo assembled, and annotated the whole genome of using a PacBio Sequel II sequencer.
View Article and Find Full Text PDFJ Fungi (Basel)
November 2024
College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China.
Fungal secondary metabolites (SMs) have broad applications in biomedicine, biocontrol, and the food industry. In this study, whole-genome sequencing and annotation of were conducted, followed by comparative genomic analysis with 11 other species of Polyporales to examine genomic variations and secondary metabolite biosynthesis pathways. Additionally, transcriptome data were used to analyze the differential expression of polyketide synthase (PKS), terpene synthase (TPS) genes, and transcription factors (TFs) under different culture conditions.
View Article and Find Full Text PDFYing Yong Sheng Tai Xue Bao
October 2024
College of Plant Protection, Shandong Agricultural University, Tai'an 271018, Shandong, China.
We investigated the effects of exogenous abscisic acid (ABA) on grain filling, starch accumulation, and endogenous hormones in maize (both the heat-tolerant maize variety Zhengdan 958 (ZD958) and the heat-sensitive variety Xianyu 335 (XY335)) under early post-anthesis high temperature stress by simulating high temperature stress for a period of 6 to 12 days post-anthesis in 2022 and 2023. There were three treatments: spraying water at ambient temperature as the control, spraying water at high temperature, and spraying ABA at high temperature. The results showed that early post-anthesis high temperature stress resulted in a significant reduction in grain weight and yield in maize, with XY335 showing a greater reduction than ZD958.
View Article and Find Full Text PDFPest Manag Sci
December 2024
College of Forestry, Fujian Agriculture and Forestry University, Fuzhou, China.
J Cell Mol Med
December 2024
Cardiovascular Center, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Fibrosis, characterised by excessive extracellular matrix deposition, contributes to both organ failure and significant mortality worldwide. Whereas fibroblasts are activated into myofibroblasts, marked by phenotypic factors such as α-smooth muscle actin (α-SMA), periostin, fibroblast activation protein (FAP) and heat shock protein 47 (HSP47), the cellular processes of trans-differentiation for fibrosis development remain poorly understood. Herein, we hypothesised that the molecular signalling of geranylgeranyl pyrophosphate (GGPP), a crucial biochemical molecule for protein prenylation, is essential in the regulation of profibrotic mechanisms for fibroblast-to-myofibroblast activation.
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