Fractal evolution is apparently effective in selectively preserving environmentally resilient traits for more than 80 million years in Streptotrichaceae (Bryophyta). An analysis simulated maximum destruction of ancestral traits in that large lineage. The constraints enforced were the preservation of newest ancestral traits, and all immediate descendant species obtained different new traits. Maximum character state changes in ancestral traits were 16 percent of all possible traits in any one sub-lineage, or 73 percent total of the entire lineage. Results showed, however, that only four ancestral traits were permanently eliminated in any one lineage or sub-lineage. A lineage maintains maximum biodiversity of temporally and regionally survival-effective traits at minimum expense to resilience across a geologic time of 88 million years for the group studied. Similar processes generating an extant punctuated equilibrium as bursts of about four descendants per genus and one genus per 1-2 epochs are possible in other living groups given similar emergent processes. The mechanism is considered complexity-related, the lineage being a self-organized emergent phenomenon strongly maintained in the ecosphere by natural selection on fractal genera.
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http://dx.doi.org/10.3390/plants13111559 | DOI Listing |
Nat Plants
January 2025
State Key Laboratory of Vegetable Biobreeding, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture and Rural Affairs, Sino-Dutch Joint Laboratory of Horticultural Genomics, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Pepper (Capsicum spp.) is a widely consumed vegetable with exceptionally large genomes in Solanaceae, yet its genomic evolutionary history remains largely unknown. Here we present 11 high-quality Capsicum genome assemblies, including two gap-free genomes, covering four wild and all five domesticated pepper species.
View Article and Find Full Text PDFAnnu Rev Entomol
January 2025
Department of Biology and Molecular Sciences Research Center, University of Puerto Rico, San Juan, Puerto Rico.
Novel traits in the order Lepidoptera include prolegs in the abdomen of larvae, scales, and eyespot and band color patterns in the wings of adults. We review recent work that investigates the developmental origin and diversification of these four traits from a gene-regulatory network (GRN) perspective. While prolegs and eyespots appear to derive from distinct ancestral GRNs co-opted to novel body regions, scales derive from in situ modifications of a sensory bristle GRN.
View Article and Find Full Text PDFAnn Bot
January 2025
Agassiz Research and Development Centre, Agriculture and Agri-food Canada, Agassiz, British Columbia, Canada.
Background And Aims: Genome size varies by orders of magnitude across land plants, and the factors driving evolutionary increases and decreases in genome size vary across lineages. Bryophytes have the smallest genomes relative to other land plants and there is growing evidence for frequent whole genome duplication (WGD) across the lineage. However, the broad patterns of genome size, chromosome number, and WGD have yet to be characterized across bryophytes in a phylogenetic context.
View Article and Find Full Text PDFbioRxiv
January 2025
Center for Genetic Epidemiology, Department of Population and Public Health Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA.
Elucidating ancestry-specific structures in admixed populations is crucial for comprehending population history and mitigating confounding effects in genome-wide association studies. Existing methods for elucidating the ancestry-specific structures generally rely on frequency-based estimates of genetic relationship matrix (GRM) among admixed individuals after masking segments from ancestry components not being targeted for investigation. However, these approaches disregard linkage information between markers, potentially limiting their resolution in revealing structure within an ancestry component.
View Article and Find Full Text PDFPeerJ
January 2025
Department of Biological Science, University of Ulsan, Ulsan, Republic of South Korea.
The genus , a group of ciliated protists, has attracted attention as a model organism due to its widespread distribution and ease of cultivation. This study examines the evolutionary patterns of the SSU rRNA secondary structure within this genus, aiming to elucidate its role in supporting evolutionary relationships and uncovering cryptic species. By predicting the secondary structure of SSU rRNA and applying the CBC (Compensatory Base Change) concept analysis, we examined 69 species of the genus , with 57 SSU rRNA gene sequences retrieved from GenBank and 12 newly sequenced specimens from South Korea.
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