AI Article Synopsis
- Figeno is a tool designed to help researchers analyze and visualize large genomic datasets, specifically focusing on creating high-quality figures for publications in genomics.
- The application specializes in multi-region genomic views, long reads with base modifications, and supports various epigenomic data types, including ATAC-seq and ChIP-seq.
- Figeno is available as a Python package that can be easily installed using PyPI, and its source code can be found on GitHub.
Article Abstract
Summary: The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modifications. In addition, we support epigenomic data including ATAC-seq, ChIP-seq or HiC, as well as whole genome sequencing data with copy numbers and structural variants.
Availability And Implementation: Figeno is available as a python package with both a command line and graphical user interface. It can be installed via PyPI and the source code is available at https://github.com/CompEpigen/figeno.
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Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11184262 | PMC |
| http://dx.doi.org/10.1093/bioinformatics/btae354 | DOI Listing |
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